RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 YTHDF2Q9Y5A9 579 aaKnown RBP10.16□□□□□ -0.78
CXCR4-203ENST00000466288 TRAV1-1A0A0B4J248 108 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 TMEM218A2RU14 115 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 METTL15P1P0C7V9 234 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 INAFM2P0DMQ5 153 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 IAPPP10997 89 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 SLC38A11Q08AI6 406 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 VWC2Q2TAL6 325 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 TIGITQ495A1 244 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 ZNF709Q8N972 641 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 NRN1Q9NPD7 142 aa10.15□□□□□ -0.78
CXCR4-203ENST00000466288 FNDC10F2Z333 226 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 CORTO00230 105 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 MPDU1O75352 247 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 NXPH3O95157 252 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 IGKV3-20P01619 116 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 MBP02144 154 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 RNASE2P10153 161 aaKnown RBP10.14□□□□□ -0.79
CXCR4-203ENST00000466288 DEFB1P60022 68 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 RAB11AP62491 216 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 PEA15Q15121 130 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 C10orf91Q5T1B1 145 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 BPIFCQ8NFQ6 507 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 LINC00052Q96N35 136 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 SEC11CQ9BY50 192 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 WDR61Q9GZS3 305 aaKnown RBP10.14□□□□□ -0.79
CXCR4-203ENST00000466288 UBR4Q5T4S7 5183 aa10.14□□□□□ -0.79
CXCR4-203ENST00000466288 LOC102723971A0A1B0GUV8 181 aa10.13□□□□□ -0.79
CXCR4-203ENST00000466288 OPRK1P41145 380 aa10.13□□□□□ -0.79
CXCR4-203ENST00000466288 DAD1P61803 113 aa10.13□□□□□ -0.79
CXCR4-203ENST00000466288 C1orf158Q8N1D5 194 aa10.13□□□□□ -0.79
CXCR4-203ENST00000466288 ENY2Q9NPA8 101 aa10.13□□□□□ -0.79
CXCR4-203ENST00000466288 UQCC1Q9NVA1 299 aa10.13□□□□□ -0.79
CXCR4-203ENST00000466288 CARHSP1Q9Y2V2 147 aaKnown RBP10.13□□□□□ -0.79
CXCR4-203ENST00000466288 PMS2P5A8MQ11 134 aa10.12□□□□□ -0.79
CXCR4-203ENST00000466288 C17orf112F2Z3M2 114 aa10.12□□□□□ -0.79
CXCR4-203ENST00000466288 H3BP45 60 aa10.12□□□□□ -0.79
CXCR4-203ENST00000466288 NDUFS6O75380 124 aaKnown RBP10.12□□□□□ -0.79
CXCR4-203ENST00000466288 H2AFB1P0C5Y9 115 aa10.12□□□□□ -0.79
CXCR4-203ENST00000466288 HOXA1P49639 335 aaPredicted RBP10.12□□□□□ -0.79
CXCR4-203ENST00000466288 TMEM182Q6ZP80 229 aaPredicted RBP10.12□□□□□ -0.79
CXCR4-203ENST00000466288 SVBPQ8N300 66 aa10.12□□□□□ -0.79
CXCR4-203ENST00000466288 CLUHP3Q96NS8 147 aa10.12□□□□□ -0.79
CXCR4-203ENST00000466288 SH3BGRL3Q9H299 93 aa10.12□□□□□ -0.79
CXCR4-203ENST00000466288 SCGB2A1O75556 95 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 SUB1P53999 127 aaKnown RBP eCLIP10.11□□□□□ -0.79
CXCR4-203ENST00000466288 DLK1P80370 383 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 USF2Q15853 346 aaPredicted RBP10.11□□□□□ -0.79
CXCR4-203ENST00000466288 SIGLEC15Q6ZMC9 328 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 FAM213BQ8TBF2 198 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 SLC35B3Q9H1N7 401 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 SAV1Q9H4B6 383 aaPredicted RBP10.11□□□□□ -0.79
CXCR4-203ENST00000466288 TREM1Q9NP99 234 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 HEYLQ9NQ87 328 aaPredicted RBP10.11□□□□□ -0.79
CXCR4-203ENST00000466288 KCNIP2Q9NS61 270 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 GOLT1BQ9Y3E0 138 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 LINC00588Q9Y4M8 146 aa10.11□□□□□ -0.79
CXCR4-203ENST00000466288 TRAV30A0A087WSZ9 112 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 BUB3O43684 328 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 IGLC1P0CG04 106 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 TAGLN2P37802 199 aaKnown RBP10.1□□□□□ -0.79
CXCR4-203ENST00000466288 ARL16Q0P5N6 197 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 Q8WTZ3 238 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 MBD3L1Q8WWY6 194 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 RRN3P1Q2M238 152 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 BSXQ3C1V8 233 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 OR8G2PQ6IF36 304 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 FOXI2Q6ZQN5 318 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 KRTAP1-5Q9BYS1 174 aa10.1□□□□□ -0.79
CXCR4-203ENST00000466288 F8W036 122 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 SNAPINO95295 136 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 NUDT3O95989 172 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 APOC3P02656 99 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 BTF3P20290 206 aaKnown RBP10.09□□□□□ -0.79
CXCR4-203ENST00000466288 CCL18P55774 89 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 YPEL3P61236 119 aaPredicted RBP10.09□□□□□ -0.79
CXCR4-203ENST00000466288 GUK1Q16774 197 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 LYPD1Q8N2G4 141 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 OR4B1Q8NGF8 309 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 WDR83OSQ9Y284 106 aa10.09□□□□□ -0.79
CXCR4-203ENST00000466288 IL4P05112 153 aa10.08□□□□□ -0.8
CXCR4-203ENST00000466288 SLC24A4Q8NFF2 622 aa10.08□□□□□ -0.8
CXCR4-203ENST00000466288 Q9H8V8 135 aa10.08□□□□□ -0.8
CXCR4-203ENST00000466288 NPVFQ9HCQ7 196 aa10.08□□□□□ -0.8
CXCR4-203ENST00000466288 SRRM2Q9UQ35 2752 aaKnown RBP10.08□□□□□ -0.8
CXCR4-203ENST00000466288 OR10J1P30954 320 aa10.07□□□□□ -0.8
CXCR4-203ENST00000466288 XGP55808 180 aa10.07□□□□□ -0.8
CXCR4-203ENST00000466288 PSG9Q00887 426 aa10.07□□□□□ -0.8
CXCR4-203ENST00000466288 RAB31Q13636 194 aa10.07□□□□□ -0.8
CXCR4-203ENST00000466288 C2orf83Q53S99 150 aa10.07□□□□□ -0.8
CXCR4-203ENST00000466288 KHDC3LQ587J8 217 aa10.07□□□□□ -0.8
CXCR4-203ENST00000466288 OR10G4Q8NGN3 311 aa10.07□□□□□ -0.8
CXCR4-203ENST00000466288 EIF5A2Q9GZV4 153 aaKnown RBP10.07□□□□□ -0.8
CXCR4-203ENST00000466288 HMCN2Q8NDA2 5059 aa10.07□□□□□ -0.8
CXCR4-203ENST00000466288 UBE2L5PA0A1B0GUS4 154 aa10.06□□□□□ -0.8
CXCR4-203ENST00000466288 LYRM9A8MSI8 78 aa10.06□□□□□ -0.8
CXCR4-203ENST00000466288 PRSS46E5RG02 174 aa10.06□□□□□ -0.8
CXCR4-203ENST00000466288 SOCS3O14543 225 aa10.06□□□□□ -0.8
CXCR4-203ENST00000466288 IFNA1P01562 189 aa10.06□□□□□ -0.8
CXCR4-203ENST00000466288 PRM2P04554 102 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms