RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PKD1L2Q7Z442 2459 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 FAM181BA6NEQ2 426 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 G3V318 75 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 IGHG4P01861 327 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 C10orf105Q8TEF2 133 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 CCDC140Q96MF4 163 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 PRR25Q96S07 402 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 ASCL2Q99929 193 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 MEGF9Q9H1U4 602 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 CSMD1Q96PZ7 3565 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 ARMS2P0C7Q2 107 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 CCL19Q99731 98 aa11.68□□□□□ -0.54
LDLR-202ENST00000455727 ABCA2Q9BZC7 2435 aa11.67□□□□□ -0.54
LDLR-202ENST00000455727 IGHV4-61A0A0C4DH41 118 aa11.67□□□□□ -0.54
LDLR-202ENST00000455727 CTRLP40313 264 aa11.67□□□□□ -0.54
LDLR-202ENST00000455727 RELQ04864 619 aaPredicted RBP11.67□□□□□ -0.54
LDLR-202ENST00000455727 C19orf54Q5BKX5 351 aa11.67□□□□□ -0.54
LDLR-202ENST00000455727 PIFOQ8TCI5 191 aa11.67□□□□□ -0.54
LDLR-202ENST00000455727 IGKV2-40A0A087WW87 121 aaPredicted RBP11.66□□□□□ -0.54
LDLR-202ENST00000455727 IGKV2D-40P01614 121 aaPredicted RBP11.66□□□□□ -0.54
LDLR-202ENST00000455727 PMCHL1Q16048 86 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 CLEC19AQ6UXS0 136 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 ZNF705AQ6ZN79 300 aaPredicted RBP11.66□□□□□ -0.54
LDLR-202ENST00000455727 CACNA1AO00555 2505 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 IGHV3-35A0A0C4DH35 117 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 CLPSL1A2RUU4 121 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 TMEM189A5PLL7 270 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 C2orf70A6NJV1 201 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 SH2D1AO60880 128 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 LINC00614P0C842 121 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 BTF3P20290 206 aaKnown RBP11.66□□□□□ -0.54
LDLR-202ENST00000455727 LCN12Q6JVE5 192 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 ZNF493Q6ZR52 646 aa11.66□□□□□ -0.54
LDLR-202ENST00000455727 BMI1P35226 326 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 SRSF2Q01130 221 aaKnown RBP11.65□□□□□ -0.54
LDLR-202ENST00000455727 EBLN2Q6P2I7 272 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 TRAV41A0A0B4J266 112 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 RBAKDNA6NC62 111 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 FAM223BA6NKX1 122 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 M0QZK8 103 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 RPS20P60866 119 aaKnown RBP11.65□□□□□ -0.54
LDLR-202ENST00000455727 ATP5G2Q06055 141 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 FAM223AQ8IWN6 122 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 SLC50A1Q9BRV3 221 aa11.65□□□□□ -0.54
LDLR-202ENST00000455727 IGHV3OR16-8A0A075B7F1 116 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 PRB4P10163 310 aaPredicted RBP11.64□□□□□ -0.55
LDLR-202ENST00000455727 PRR31Q5SQ13 230 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 CLEC2AQ6UVW9 174 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 TMEM219Q86XT9 240 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 VGLL1Q99990 258 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 PIEZO1Q92508 2521 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 OR5AL1P0C617 328 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 U3KQE9 123 aa11.64□□□□□ -0.55
LDLR-202ENST00000455727 TRAV40A0A0B4J280 105 aa11.63□□□□□ -0.55
LDLR-202ENST00000455727 CRXO43186 299 aaPredicted RBP11.63□□□□□ -0.55
LDLR-202ENST00000455727 BRI3O95415 125 aa11.63□□□□□ -0.55
LDLR-202ENST00000455727 SPATA45Q537H7 98 aa11.63□□□□□ -0.55
LDLR-202ENST00000455727 METTL26Q96S19 204 aa11.63□□□□□ -0.55
LDLR-202ENST00000455727 IGHV1-24A0A0C4DH33 117 aa11.63□□□□□ -0.55
LDLR-202ENST00000455727 IGF1P05019 195 aa11.63□□□□□ -0.55
LDLR-202ENST00000455727 HLA-DMBP28068 263 aa11.63□□□□□ -0.55
LDLR-202ENST00000455727 LYZL1Q6UWQ5 148 aa11.63□□□□□ -0.55
LDLR-202ENST00000455727 CACNA1BQ00975 2339 aa11.62□□□□□ -0.55
LDLR-202ENST00000455727 IGHV3OR16-10A0A075B7F0 116 aa11.62□□□□□ -0.55
LDLR-202ENST00000455727 ATP5J2P56134 94 aa11.62□□□□□ -0.55
LDLR-202ENST00000455727 IGFL4Q6B9Z1 124 aa11.62□□□□□ -0.55
LDLR-202ENST00000455727 BRD3OSQ6XYD6 125 aa11.62□□□□□ -0.55
LDLR-202ENST00000455727 TMEM70Q9BUB7 260 aa11.62□□□□□ -0.55
LDLR-202ENST00000455727 M0QZ24 198 aa11.61□□□□□ -0.55
LDLR-202ENST00000455727 ZNF124Q15973 351 aa11.61□□□□□ -0.55
LDLR-202ENST00000455727 KLHDC1Q8N7A1 406 aa11.61□□□□□ -0.55
LDLR-202ENST00000455727 MRPL53Q96EL3 112 aaKnown RBP11.61□□□□□ -0.55
LDLR-202ENST00000455727 C20orf202A1L168 122 aa11.61□□□□□ -0.55
LDLR-202ENST00000455727 ZNF80P51504 273 aaPredicted RBP11.61□□□□□ -0.55
LDLR-202ENST00000455727 Q8TAT8 98 aa11.61□□□□□ -0.55
LDLR-202ENST00000455727 SPOCK3Q9BQ16 436 aa11.61□□□□□ -0.55
LDLR-202ENST00000455727 TPPP3Q9BW30 176 aa11.61□□□□□ -0.55
LDLR-202ENST00000455727 SVEP1Q4LDE5 3571 aa11.61□□□□□ -0.55
LDLR-202ENST00000455727 FABP5P3A8MUU1 101 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 LEPROTL1O95214 131 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 UQCR10Q9UDW1 63 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 U3KQK5 164 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 IGHV4-30-2A0A087WSY4 118 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 H3BUA1 57 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 IGLC6P0CF74 106 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 IGLC3P0DOY3 106 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 IGHV4-38-2P0DP08 117 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 HIF1ANQ9NWT6 349 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 CLEC5AQ9NY25 188 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 CFAP46Q8IYW2 2715 aa11.6□□□□□ -0.55
LDLR-202ENST00000455727 TRAV9-2A0A087WT02 112 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 TMSB15BA0A087X1C1 80 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 IGHG2P01859 326 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 TRGV3P03979 118 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 RPLP1P05386 114 aaKnown RBP11.59□□□□□ -0.55
LDLR-202ENST00000455727 MSMBP08118 114 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 FAM104BQ5XKR9 115 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 A6NDX4 124 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 PRAC2D3DTV9 90 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms