RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 COX8AP10176 69 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 GATA2P23769 480 aaPredicted RBP3.86□□□□□ -1.79
VPS35-205ENST00000563984 CSN1S1P47710 185 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 RPL34P49207 117 aaKnown RBP3.86□□□□□ -1.79
VPS35-205ENST00000563984 UBE2G1P62253 170 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 FUT5Q11128 374 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 SPANXN4Q5MJ08 99 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 UNQ9165/PRO28630Q6UXU0 137 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 PCP2Q8IVA1 136 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 CEND1Q8N111 149 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 OR5AS1Q8N127 324 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 RPP25LQ8N5L8 163 aaKnown RBP3.86□□□□□ -1.79
VPS35-205ENST00000563984 ZNF689Q96CS4 500 aaPredicted RBP3.86□□□□□ -1.79
VPS35-205ENST00000563984 CNRIP1Q96F85 164 aaPredicted RBP3.86□□□□□ -1.79
VPS35-205ENST00000563984 GABARAPL3Q9BY60 117 aa3.86□□□□□ -1.79
VPS35-205ENST00000563984 PARP4Q9UKK3 1724 aaKnown RBP3.86□□□□□ -1.79
VPS35-205ENST00000563984 SCN8AQ9UQD0 1980 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 MYOM1P52179 1685 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 COL5A3P25940 1745 aaPredicted RBP3.85□□□□□ -1.79
VPS35-205ENST00000563984 TRAV2A0A0B4J234 112 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 TRAV41A0A0B4J266 112 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 IGHV3OR16-9A0A0B4J2B5 98 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 H0Y9J4 135 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 SERF1AO75920 110 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 TCL1BO95988 128 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 HLA-DQA1P01909 254 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 HLA-DPB1P04440 258 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 CFC1BP0CG36 223 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 CFC1P0CG37 223 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 SCGB1C2P0DMR2 95 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 COL8A2P25067 703 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 CD70P32970 193 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 ERVK-16P61578 105 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 UBE2L3P68036 154 aaKnown RBP3.85□□□□□ -1.79
VPS35-205ENST00000563984 NSUN5P1Q3KNT7 163 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 ORMDL2Q53FV1 153 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 CFAP126Q5VTH2 177 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 LGALS9CQ6DKI2 356 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 HMGN2P46Q86SG4 172 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 SBSPONQ8IVN8 264 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 RAB42Q8N4Z0 105 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 APCDD1LQ8NCL9 501 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 OR8A1Q8NGG7 326 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 C10orf105Q8TEF2 133 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 TMEM158Q8WZ71 300 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 TOMM6Q96B49 74 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 FXYD5Q96DB9 178 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 DSCR8Q96T75 97 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 CHAC1Q9BUX1 264 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 NMES1Q9C002 83 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 DPH3P1Q9H4G8 78 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 ABRACLQ9P1F3 81 aa3.85□□□□□ -1.79
VPS35-205ENST00000563984 LSM2Q9Y333 95 aaKnown RBP3.85□□□□□ -1.79
VPS35-205ENST00000563984 ALS2Q96Q42 1657 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 RALGAPA1Q6GYQ0 2036 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 TRBV20OR9-2A0A075B6H5 130 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 TRBV27A0A0K0K1C4 114 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 LOC100131303A0A0U1RQF7 123 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 MDFIC2A0A1B0GVS7 189 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 SNURFLB1AK76 121 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 ZNF73O43830 326 aaPredicted RBP3.84□□□□□ -1.79
VPS35-205ENST00000563984 NUPR1O60356 82 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 SOD1P00441 154 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 SSR2P43308 183 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 MP68P56378 58 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 ATP5EP56381 51 aaPredicted RBP3.84□□□□□ -1.79
VPS35-205ENST00000563984 LINC01547P58512 204 aaPredicted RBP3.84□□□□□ -1.79
VPS35-205ENST00000563984 B3GALT5-AS1P59052 145 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 SNRPFP62306 86 aaKnown RBP3.84□□□□□ -1.79
VPS35-205ENST00000563984 SNRPD3P62318 126 aaKnown RBP3.84□□□□□ -1.79
VPS35-205ENST00000563984 ZNF791Q3KP31 576 aaPredicted RBP3.84□□□□□ -1.79
VPS35-205ENST00000563984 FAM78AQ5JUQ0 283 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 ATP1A1-AS1Q5TC04 95 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 ZC2HC1BQ5TFG8 222 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 DNM1P46Q6ZS02 220 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 LCA10Q71F78 164 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 MKXQ8IYA7 352 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 TMEM75Q8N9X5 138 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 FAM57AQ8TBR7 257 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 DCANP1Q8TF63 244 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 PPP1R1CQ8WVI7 109 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 FGF13Q92913 245 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 FAM3DQ96BQ1 224 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 C18orf12Q96KH6 178 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 OR8B2Q96RD0 313 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 HDHD3Q9BSH5 251 aaPredicted RBP3.84□□□□□ -1.79
VPS35-205ENST00000563984 CALYQ9NYX4 217 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 NOTCH3Q9UM47 2321 aa3.84□□□□□ -1.79
VPS35-205ENST00000563984 KCPQ6ZWJ8 1503 aa3.84□□□□□ -1.8
VPS35-205ENST00000563984 PKD1L3Q7Z443 1732 aa3.84□□□□□ -1.8
VPS35-205ENST00000563984 TNS1Q9HBL0 1735 aaKnown RBP3.84□□□□□ -1.8
VPS35-205ENST00000563984 COL14A1Q05707 1796 aaKnown RBP3.84□□□□□ -1.8
VPS35-205ENST00000563984 IGLV1-36A0A0B4J1U3 117 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 KLF18A0A0U1RQI7 1052 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 UBE2L5PA0A1B0GUS4 154 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 RBMY1BA6NDE4 496 aaKnown RBP3.83□□□□□ -1.8
VPS35-205ENST00000563984 RBMY1EA6NEQ0 496 aaKnown RBP3.83□□□□□ -1.8
VPS35-205ENST00000563984 ZNF736B4DX44 427 aaPredicted RBP3.83□□□□□ -1.8
VPS35-205ENST00000563984 M0R378 163 aa3.83□□□□□ -1.8
VPS35-205ENST00000563984 M0R381 172 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms