RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 FAUP35544 74 aaKnown RBP8.49□□□□□ -1.05
SNHG1-216ENST00000541416 ERVFC1-1P60608 527 aa8.49□□□□□ -1.05
SNHG1-216ENST00000541416 SELENOTP62341 195 aa8.49□□□□□ -1.05
SNHG1-216ENST00000541416 ESRGQ1W209 222 aa8.49□□□□□ -1.05
SNHG1-216ENST00000541416 SPANXN5Q5MJ07 72 aa8.49□□□□□ -1.05
SNHG1-216ENST00000541416 RPUSD4Q96CM3 377 aaKnown RBP8.49□□□□□ -1.05
SNHG1-216ENST00000541416 DIRAS2Q96HU8 199 aa8.49□□□□□ -1.05
SNHG1-216ENST00000541416 SHANK2-AS3Q9BTD1 123 aa8.49□□□□□ -1.05
SNHG1-216ENST00000541416 KRTAP1-5Q9BYS1 174 aa8.49□□□□□ -1.05
SNHG1-216ENST00000541416 STRAPQ9Y3F4 350 aaKnown RBP8.49□□□□□ -1.05
SNHG1-216ENST00000541416 GAGE12BA1L429 117 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 SMCO3A2RU48 225 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 GAGE7O76087 117 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 IFNA5P01569 189 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 GAGE12FP0CL80 117 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 GAGE12GP0CL81 117 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 GAGE12IP0CL82 117 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 CXCL2P19875 107 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 ANXA7P20073 488 aaKnown RBP8.48□□□□□ -1.05
SNHG1-216ENST00000541416 CTF1Q16619 201 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 TMEM128Q5BJH2 165 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 CYP2G1PQ6ZSU1 146 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 ACOT7LQ6ZUV0 252 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 MIXL1Q9H2W2 232 aa8.48□□□□□ -1.05
SNHG1-216ENST00000541416 RSL24D1Q9UHA3 163 aaKnown RBP8.48□□□□□ -1.05
SNHG1-216ENST00000541416 DMBT1Q9UGM3 2413 aaPredicted RBP8.48□□□□□ -1.05
SNHG1-216ENST00000541416 PRSS46E5RG02 174 aa8.47□□□□□ -1.05
SNHG1-216ENST00000541416 LINC00869P0C866 280 aa8.47□□□□□ -1.05
SNHG1-216ENST00000541416 LINC00315P59091 139 aa8.47□□□□□ -1.05
SNHG1-216ENST00000541416 LCN15Q6UWW0 184 aa8.47□□□□□ -1.05
SNHG1-216ENST00000541416 TMED4Q7Z7H5 227 aa8.47□□□□□ -1.05
SNHG1-216ENST00000541416 LYPD1Q8N2G4 141 aa8.47□□□□□ -1.05
SNHG1-216ENST00000541416 LINC00612Q8N6U2 182 aa8.47□□□□□ -1.05
SNHG1-216ENST00000541416 SLC50A1Q9BRV3 221 aa8.47□□□□□ -1.05
SNHG1-216ENST00000541416 FAT1Q14517 4588 aa8.46□□□□□ -1.05
SNHG1-216ENST00000541416 CTDSP2O14595 271 aa8.46□□□□□ -1.06
SNHG1-216ENST00000541416 SIVA1O15304 175 aa8.46□□□□□ -1.06
SNHG1-216ENST00000541416 VAMP1P23763 118 aa8.46□□□□□ -1.06
SNHG1-216ENST00000541416 PLP1P60201 277 aa8.46□□□□□ -1.06
SNHG1-216ENST00000541416 TMEM182Q6ZP80 229 aaPredicted RBP8.46□□□□□ -1.06
SNHG1-216ENST00000541416 CCDC190Q86UF4 302 aa8.46□□□□□ -1.06
SNHG1-216ENST00000541416 NFE4Q86UQ8 179 aa8.46□□□□□ -1.06
SNHG1-216ENST00000541416 LRTM2Q8N967 370 aa8.46□□□□□ -1.06
SNHG1-216ENST00000541416 TRGV2A0A075B6R0 118 aa8.45□□□□□ -1.06
SNHG1-216ENST00000541416 HOXA5P20719 270 aa8.45□□□□□ -1.06
SNHG1-216ENST00000541416 AP3S2P59780 193 aa8.45□□□□□ -1.06
SNHG1-216ENST00000541416 PXDC1Q5TGL8 231 aa8.45□□□□□ -1.06
SNHG1-216ENST00000541416 Q5VSD8 79 aa8.45□□□□□ -1.06
SNHG1-216ENST00000541416 PYGO2Q9BRQ0 406 aa8.45□□□□□ -1.06
SNHG1-216ENST00000541416 NAA50Q9GZZ1 169 aaKnown RBP8.45□□□□□ -1.06
SNHG1-216ENST00000541416 ARL6Q9H0F7 186 aa8.45□□□□□ -1.06
SNHG1-216ENST00000541416 TRAV9-2A0A087WT02 112 aa8.44□□□□□ -1.06
SNHG1-216ENST00000541416 PMS2P5A8MQ11 134 aa8.44□□□□□ -1.06
SNHG1-216ENST00000541416 H3BP45 60 aa8.44□□□□□ -1.06
SNHG1-216ENST00000541416 LEPP41159 167 aa8.44□□□□□ -1.06
SNHG1-216ENST00000541416 DAZ2Q13117 558 aaKnown RBP8.44□□□□□ -1.06
SNHG1-216ENST00000541416 GFI1BQ5VTD9 330 aa8.44□□□□□ -1.06
SNHG1-216ENST00000541416 BPIFA4PQ86YQ2 179 aa8.44□□□□□ -1.06
SNHG1-216ENST00000541416 TMPRSS5Q9H3S3 457 aa8.44□□□□□ -1.06
SNHG1-216ENST00000541416 A0A096LPF7 62 aa8.43□□□□□ -1.06
SNHG1-216ENST00000541416 HOXB5P09067 269 aa8.43□□□□□ -1.06
SNHG1-216ENST00000541416 ZNF680Q8NEM1 530 aa8.43□□□□□ -1.06
SNHG1-216ENST00000541416 ODF3Q96PU9 254 aa8.43□□□□□ -1.06
SNHG1-216ENST00000541416 SLC25A21Q9BQT8 299 aaPredicted RBP8.43□□□□□ -1.06
SNHG1-216ENST00000541416 ARV1Q9H2C2 271 aa8.43□□□□□ -1.06
SNHG1-216ENST00000541416 NPVFQ9HCQ7 196 aa8.43□□□□□ -1.06
SNHG1-216ENST00000541416 ZNF331Q9NQX6 463 aaPredicted RBP8.43□□□□□ -1.06
SNHG1-216ENST00000541416 MGAT4CQ9UBM8 478 aa8.43□□□□□ -1.06
SNHG1-216ENST00000541416 PXMP4Q9Y6I8 212 aa8.43□□□□□ -1.06
SNHG1-216ENST00000541416 FABP12A6NFH5 140 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 FNDC10F2Z333 226 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 FAM229AH3BQW9 127 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 GOSR2O14653 212 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 TEPPQ6URK8 271 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 Q6ZRN7 208 aaPredicted RBP8.42□□□□□ -1.06
SNHG1-216ENST00000541416 LINC00305Q7Z4B0 112 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 ZNF546Q86UE3 836 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 C18orf15Q96N68 181 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 PSENENQ9NZ42 101 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 ICOSQ9Y6W8 199 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 VPS13BQ7Z7G8 4022 aa8.42□□□□□ -1.06
SNHG1-216ENST00000541416 TRAV12-3A0A0B4J271 114 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 K7EP13 123 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 K7EPK0 472 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 SFT2D2O95562 160 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 XGP55808 180 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 SLAQ13239 276 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 ICAM4Q14773 271 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 C4orf46Q504U0 113 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 Q6ZTI0 123 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 TOMM5Q8N4H5 51 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 ZBTB8BQ8NAP8 495 aaPredicted RBP8.41□□□□□ -1.06
SNHG1-216ENST00000541416 OR10P1Q8NGE3 313 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 CCDC59Q9P031 241 aaKnown RBP8.41□□□□□ -1.06
SNHG1-216ENST00000541416 MYCBP2O75592 4640 aa8.41□□□□□ -1.06
SNHG1-216ENST00000541416 J3KRW8 73 aa8.4□□□□□ -1.06
SNHG1-216ENST00000541416 MRPS12O15235 138 aaKnown RBP8.4□□□□□ -1.06
SNHG1-216ENST00000541416 PAX4O43316 350 aa8.4□□□□□ -1.06
SNHG1-216ENST00000541416 COX7A2P2O60397 106 aa8.4□□□□□ -1.06
SNHG1-216ENST00000541416 NXPH4O95158 308 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms