RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 NPIPB6E9PJ23 425 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 F2Z2F3 143 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 GZMBP10144 247 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 PRB4P10163 310 aaPredicted RBP16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 ESDP10768 282 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 GDF5OSQ5U4N7 250 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 TCF24Q7RTU0 167 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 ZNF843Q8N446 348 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 OR5R1Q8NH85 324 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 EEF1AKMT3Q96AZ1 226 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 PRDM13Q9H4Q3 707 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 SMAD5-AS1Q9Y6J3 95 aa16.38■□□□□ 0.21
CCDC88B-208ENST00000492980 TRAV41A0A0B4J266 112 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 ZNF785A8K8V0 405 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 A8MWL6 223 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 SERF1AO75920 110 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 PSG9Q00887 426 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 CLEC19AQ6UXS0 136 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 ZFP30Q9Y2G7 519 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 B4DSR2 109 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 APCSP02743 223 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 SRSF1Q07955 248 aaKnown RBP eCLIP16.37■□□□□ 0.212e-7■■■■■ 28
CCDC88B-208ENST00000492980 GTSF1Q8WW33 167 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 ZC2HC1AQ96GY0 325 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 GNB4Q9HAV0 340 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 MYO18BQ8IUG5 2567 aa16.37■□□□□ 0.21
CCDC88B-208ENST00000492980 S100A7P31151 101 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 SLAQ13239 276 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 C16orf54Q6UWD8 224 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 ATP5L2Q7Z4Y8 100 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 BAGE3Q86Y29 109 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 HIF1ANQ9NWT6 349 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 SPG11Q96JI7 2443 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 TRBV7-1A0A0A6YYK4 115 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 A0A1B0GXF2 115 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 COL8A1P27658 744 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 NOL4LQ96MY1 436 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 ASCL2Q99929 193 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 GFRA4Q9GZZ7 299 aa16.36■□□□□ 0.21
CCDC88B-208ENST00000492980 UTP20O75691 2785 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-208ENST00000492980 LY6EQ16553 131 aa16.35■□□□□ 0.21
CCDC88B-208ENST00000492980 OR4B1Q8NGF8 309 aa16.35■□□□□ 0.21
CCDC88B-208ENST00000492980 LINC00527Q9UJ94 153 aa16.35■□□□□ 0.21
CCDC88B-208ENST00000492980 A6NDX4 124 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 H3BUX3 64 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 COX6B1P14854 86 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 SRIP30626 198 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 OR10J3Q5JRS4 329 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 C9orf152Q5JTZ5 239 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 ZFYVE26Q68DK2 2539 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 ZFHX3Q15911 3703 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 AVPP01185 164 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 CSN1S1P47710 185 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 ATP5G2Q06055 141 aa16.34■□□□□ 0.21
CCDC88B-208ENST00000492980 SERTM2A0A1B0GWG4 89 aa16.33■□□□□ 0.21
CCDC88B-208ENST00000492980 CLPSL1A2RUU4 121 aa16.33■□□□□ 0.21
CCDC88B-208ENST00000492980 ZNF253O75346 499 aa16.33■□□□□ 0.21
CCDC88B-208ENST00000492980 SLC25A16P16260 332 aa16.33■□□□□ 0.21
CCDC88B-208ENST00000492980 ZNF462Q96JM2 2506 aa16.33■□□□□ 0.2
CCDC88B-208ENST00000492980 TRAV20A0A0B4J274 112 aa16.33■□□□□ 0.2
CCDC88B-208ENST00000492980 FAM231BA6NCW3 169 aa16.33■□□□□ 0.2
CCDC88B-208ENST00000492980 FAM223BA6NKX1 122 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 BUB3O43684 328 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 IGF1P05019 195 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 CAMPP49913 170 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 TPPP2P59282 170 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 PAFAH1B2P68402 229 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 FAM223AQ8IWN6 122 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 ARL6IP6Q8N6S5 226 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 OR2D3Q8NGH3 330 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 PGLYRP4Q96LB8 373 aa16.32■□□□□ 0.2
CCDC88B-208ENST00000492980 RAB9AP51151 201 aa16.31■□□□□ 0.2
CCDC88B-208ENST00000492980 RBPMS2Q6ZRY4 209 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-208ENST00000492980 A1L4Q6 167 aa16.31■□□□□ 0.2
CCDC88B-208ENST00000492980 GATA3P23771 443 aa16.31■□□□□ 0.2
CCDC88B-208ENST00000492980 CRIP1P50238 77 aa16.31■□□□□ 0.2
CCDC88B-208ENST00000492980 HBBP68871 147 aa16.31■□□□□ 0.2
CCDC88B-208ENST00000492980 ATP6V0BQ99437 205 aa16.31■□□□□ 0.2
CCDC88B-208ENST00000492980 IGKV2-40A0A087WW87 121 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 A0A087X0K7 114 aa16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 A0A096LNT2 108 aa16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 CHEK1O14757 476 aa16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 IGKV2D-40P01614 121 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 IGHG4P01861 327 aa16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 C8orf49Q96NF6 230 aa16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 SSBP4Q9BWG4 385 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 IGHG2P01859 326 aa16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 TRGV3P03979 118 aa16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 RELQ04864 619 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 RCHY1Q96PM5 261 aa16.3■□□□□ 0.2
CCDC88B-208ENST00000492980 CELSR1Q9NYQ6 3014 aa16.29■□□□□ 0.2
CCDC88B-208ENST00000492980 UBR5O95071 2799 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-208ENST00000492980 HLA-DMBP28068 263 aa16.29■□□□□ 0.2
CCDC88B-208ENST00000492980 IGFL4Q6B9Z1 124 aa16.29■□□□□ 0.2
CCDC88B-208ENST00000492980 CRYBG3Q68DQ2 2970 aa16.28■□□□□ 0.2
CCDC88B-208ENST00000492980 CELSR2Q9HCU4 2923 aa16.28■□□□□ 0.2
CCDC88B-208ENST00000492980 M0QZK8 103 aa16.28■□□□□ 0.2
CCDC88B-208ENST00000492980 LINC01356Q8N9X3 169 aa16.28■□□□□ 0.2
CCDC88B-208ENST00000492980 IGHV3-66A0A0C4DH42 116 aa16.27■□□□□ 0.2
CCDC88B-208ENST00000492980 APOHP02749 345 aaPredicted RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms