RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 STRAPQ9Y3F4 350 aaKnown RBP9.81□□□□□ -0.84
PTCH1-202ENST00000375271 ZNF701M0R085 212 aaPredicted RBP9.8□□□□□ -0.84
PTCH1-202ENST00000375271 SYNGR2O43760 224 aa9.8□□□□□ -0.84
PTCH1-202ENST00000375271 IFNA5P01569 189 aa9.8□□□□□ -0.84
PTCH1-202ENST00000375271 CXCL3P19876 107 aa9.8□□□□□ -0.84
PTCH1-202ENST00000375271 ACOT7LQ6ZUV0 252 aa9.8□□□□□ -0.84
PTCH1-202ENST00000375271 RNASE8Q8TDE3 154 aaKnown RBP9.8□□□□□ -0.84
PTCH1-202ENST00000375271 RPUSD4Q96CM3 377 aaKnown RBP9.8□□□□□ -0.84
PTCH1-202ENST00000375271 SHANK2-AS3Q9BTD1 123 aa9.8□□□□□ -0.84
PTCH1-202ENST00000375271 KRTAP1-5Q9BYS1 174 aa9.8□□□□□ -0.84
PTCH1-202ENST00000375271 PGPEP1Q9NXJ5 209 aa9.8□□□□□ -0.84
PTCH1-202ENST00000375271 ANKRD20A5PA0PJZ0 165 aa9.79□□□□□ -0.84
PTCH1-202ENST00000375271 H3BP45 60 aa9.79□□□□□ -0.84
PTCH1-202ENST00000375271 CTDSPLO15194 276 aa9.79□□□□□ -0.84
PTCH1-202ENST00000375271 LINC00869P0C866 280 aa9.79□□□□□ -0.84
PTCH1-202ENST00000375271 SLC25A6P12236 298 aa9.79□□□□□ -0.84
PTCH1-202ENST00000375271 LINC00315P59091 139 aa9.79□□□□□ -0.84
PTCH1-202ENST00000375271 ESRGQ1W209 222 aa9.79□□□□□ -0.84
PTCH1-202ENST00000375271 CYP2G1PQ6ZSU1 146 aa9.79□□□□□ -0.84
PTCH1-202ENST00000375271 RSL24D1Q9UHA3 163 aaKnown RBP9.79□□□□□ -0.84
PTCH1-202ENST00000375271 APOBP04114 4563 aaKnown RBP9.78□□□□□ -0.84
PTCH1-202ENST00000375271 TRGV2A0A075B6R0 118 aa9.78□□□□□ -0.84
PTCH1-202ENST00000375271 H3BNG1 76 aa9.78□□□□□ -0.84
PTCH1-202ENST00000375271 SELENOTP62341 195 aa9.78□□□□□ -0.84
PTCH1-202ENST00000375271 CDPF1Q6NVV7 123 aa9.78□□□□□ -0.84
PTCH1-202ENST00000375271 LCN15Q6UWW0 184 aa9.78□□□□□ -0.84
PTCH1-202ENST00000375271 SLC50A1Q9BRV3 221 aa9.78□□□□□ -0.84
PTCH1-202ENST00000375271 NAA50Q9GZZ1 169 aaKnown RBP9.78□□□□□ -0.84
PTCH1-202ENST00000375271 MIXL1Q9H2W2 232 aa9.78□□□□□ -0.84
PTCH1-202ENST00000375271 A0A087X0K7 114 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 J3KRW8 73 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 CTDSP2O14595 271 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 PITX3O75364 302 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 CXCL2P19875 107 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 CTF1Q16619 201 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 TMEM128Q5BJH2 165 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 C17orf77Q96MU5 243 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 ARL6Q9H0F7 186 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 MGAT4CQ9UBM8 478 aa9.77□□□□□ -0.85
PTCH1-202ENST00000375271 DMBT1Q9UGM3 2413 aaPredicted RBP9.76□□□□□ -0.85
PTCH1-202ENST00000375271 HERC1Q15751 4861 aa9.76□□□□□ -0.85
PTCH1-202ENST00000375271 SIVA1O15304 175 aa9.76□□□□□ -0.85
PTCH1-202ENST00000375271 LEPP41159 167 aa9.76□□□□□ -0.85
PTCH1-202ENST00000375271 AP3S2P59780 193 aa9.76□□□□□ -0.85
PTCH1-202ENST00000375271 Q5VSD8 79 aa9.76□□□□□ -0.85
PTCH1-202ENST00000375271 TMEM182Q6ZP80 229 aaPredicted RBP9.76□□□□□ -0.85
PTCH1-202ENST00000375271 NFE4Q86UQ8 179 aa9.76□□□□□ -0.85
PTCH1-202ENST00000375271 TMPRSS5Q9H3S3 457 aa9.76□□□□□ -0.85
PTCH1-202ENST00000375271 HOXB5P09067 269 aa9.75□□□□□ -0.85
PTCH1-202ENST00000375271 PRB4P10163 310 aaPredicted RBP9.75□□□□□ -0.85
PTCH1-202ENST00000375271 HOXA5P20719 270 aa9.75□□□□□ -0.85
PTCH1-202ENST00000375271 TRAV9-2A0A087WT02 112 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 PMS2P5A8MQ11 134 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 PRSS46E5RG02 174 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 GOSR2O14653 212 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 RRAS2P62070 204 aaPredicted RBP9.74□□□□□ -0.85
PTCH1-202ENST00000375271 GFI1BQ5VTD9 330 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 BPIFA4PQ86YQ2 179 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 LYPD1Q8N2G4 141 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 MCFD2Q8NI22 146 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 PYGO2Q9BRQ0 406 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 ARV1Q9H2C2 271 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 PSENENQ9NZ42 101 aa9.74□□□□□ -0.85
PTCH1-202ENST00000375271 TRAV12-3A0A0B4J271 114 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 COX7A2P2O60397 106 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 NOL3O60936 208 aaKnown RBP9.73□□□□□ -0.85
PTCH1-202ENST00000375271 PLP1P60201 277 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 PXDC1Q5TGL8 231 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 TEPPQ6URK8 271 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 LINC00612Q8N6U2 182 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 LRTM2Q8N967 370 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 ZBTB8BQ8NAP8 495 aaPredicted RBP9.73□□□□□ -0.85
PTCH1-202ENST00000375271 ZNF680Q8NEM1 530 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 PARD6GQ9BYG4 376 aaPredicted RBP9.73□□□□□ -0.85
PTCH1-202ENST00000375271 NPVFQ9HCQ7 196 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 ZNF331Q9NQX6 463 aaPredicted RBP9.73□□□□□ -0.85
PTCH1-202ENST00000375271 PXMP4Q9Y6I8 212 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 ICOSQ9Y6W8 199 aa9.73□□□□□ -0.85
PTCH1-202ENST00000375271 A0A096LPF7 62 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 TRGV1A0A0A0MS02 117 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 FABP12A6NFH5 140 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 FAM229AH3BQW9 127 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 SSSCA1O60232 199 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 NXPH4O95158 308 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 SNRPCP09234 159 aaKnown RBP9.72□□□□□ -0.85
PTCH1-202ENST00000375271 Q6ZTI0 123 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 LINC00305Q7Z4B0 112 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 ZNF546Q86UE3 836 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 TOMM5Q8N4H5 51 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 OR10P1Q8NGE3 313 aa9.72□□□□□ -0.85
PTCH1-202ENST00000375271 CCDC59Q9P031 241 aaKnown RBP9.72□□□□□ -0.85
PTCH1-202ENST00000375271 PAX4O43316 350 aa9.71□□□□□ -0.86
PTCH1-202ENST00000375271 SFT2D2O95562 160 aa9.71□□□□□ -0.86
PTCH1-202ENST00000375271 POLR2GP62487 172 aaKnown RBP eCLIP9.71□□□□□ -0.86
PTCH1-202ENST00000375271 SLC38A11Q08AI6 406 aa9.71□□□□□ -0.86
PTCH1-202ENST00000375271 DAZ2Q13117 558 aaKnown RBP9.71□□□□□ -0.86
PTCH1-202ENST00000375271 ICAM4Q14773 271 aa9.71□□□□□ -0.86
PTCH1-202ENST00000375271 SLC25A21Q9BQT8 299 aaPredicted RBP9.71□□□□□ -0.86
PTCH1-202ENST00000375271 SCGB1D2O95969 90 aa9.7□□□□□ -0.86
PTCH1-202ENST00000375271 FUSP35637 526 aaKnown RBP eCLIP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms