RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 NDUFA3O95167 84 aa11.16□□□□□ -0.62
GGA3-220ENST00000613421 TOMM40O96008 361 aa11.16□□□□□ -0.62
GGA3-220ENST00000613421 LYPD1Q8N2G4 141 aa11.16□□□□□ -0.62
GGA3-220ENST00000613421 ITLN2Q8WWU7 325 aaPredicted RBP11.16□□□□□ -0.62
GGA3-220ENST00000613421 PRSS22Q9GZN4 317 aa11.16□□□□□ -0.62
GGA3-220ENST00000613421 Q6ZSR3 168 aa11.16□□□□□ -0.62
GGA3-220ENST00000613421 PSG3Q16557 428 aa11.15□□□□□ -0.62
GGA3-220ENST00000613421 BEND2Q8NDZ0 799 aa11.15□□□□□ -0.62
GGA3-220ENST00000613421 LINC00479Q96M42 142 aa11.15□□□□□ -0.62
GGA3-220ENST00000613421 IGLV3-9A0A075B6K5 115 aa11.15□□□□□ -0.62
GGA3-220ENST00000613421 EVI2AP22794 236 aa11.15□□□□□ -0.62
GGA3-220ENST00000613421 CADP27708 2225 aa11.15□□□□□ -0.62
GGA3-220ENST00000613421 SRSF1Q07955 248 aaKnown RBP eCLIP11.15□□□□□ -0.62
GGA3-220ENST00000613421 LYZL1Q6UWQ5 148 aa11.15□□□□□ -0.62
GGA3-220ENST00000613421 PRTN3P24158 256 aa11.15□□□□□ -0.63
GGA3-220ENST00000613421 KRTAP27-1Q3LI81 207 aa11.15□□□□□ -0.63
GGA3-220ENST00000613421 FAM215AQ9Y5M1 114 aa11.15□□□□□ -0.63
GGA3-220ENST00000613421 ZNF134P52741 427 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 TEX36Q5VZQ5 186 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 IFI27L1Q96BM0 104 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 ST20Q9HBF5 79 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 PEMTQ9UBM1 199 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 ZNF256Q9Y2P7 627 aaPredicted RBP11.14□□□□□ -0.63
GGA3-220ENST00000613421 PCNX1Q96RV3 2341 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 D6R8Y8 96 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 SPOCK3Q9BQ16 436 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 MRPL27Q9P0M9 148 aaKnown RBP11.14□□□□□ -0.63
GGA3-220ENST00000613421 KIAA1549LQ6ZVL6 1849 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 K7ENP7 123 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 Q86TA4 180 aa11.14□□□□□ -0.63
GGA3-220ENST00000613421 FGF23Q9GZV9 251 aaPredicted RBP11.14□□□□□ -0.63
GGA3-220ENST00000613421 MEIG1Q5JSS6 88 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 COPS9Q8WXC6 57 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 WNK2Q9Y3S1 2297 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 SH2D1AO60880 128 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 DPM2O94777 84 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 SHANK2-AS3Q9BTD1 123 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 MRPL16Q9NX20 251 aaKnown RBP11.13□□□□□ -0.63
GGA3-220ENST00000613421 LDLRAD2Q5SZI1 272 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 DOCK11Q5JSL3 2073 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 TRBV7-1A0A0A6YYK4 115 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 DUSP14O95147 198 aaKnown RBP11.13□□□□□ -0.63
GGA3-220ENST00000613421 LOXP28300 417 aaPredicted RBP11.13□□□□□ -0.63
GGA3-220ENST00000613421 ORMDL2Q53FV1 153 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 Q8TAT8 98 aa11.13□□□□□ -0.63
GGA3-220ENST00000613421 NCR2O95944 276 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 C3orf79P0CE67 100 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 SMIM12Q96EX1 92 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 LINC01587Q99440 93 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 MSRB2Q9Y3D2 182 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 DOCK10Q96BY6 2186 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 PSMB11A5LHX3 300 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 GNLYP22749 145 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 USF3Q68DE3 2245 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 CNTFRP26992 372 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 SUMO2P61956 95 aaKnown RBP11.12□□□□□ -0.63
GGA3-220ENST00000613421 PIP4P1Q86T03 277 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 LYPD6BQ8NI32 183 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 CYYR1Q96J86 154 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 PF4P02776 101 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 ZNF138P52744 262 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 BRD3OSQ6XYD6 125 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 LINC00311Q8N616 119 aa11.12□□□□□ -0.63
GGA3-220ENST00000613421 MMP23AO75900 390 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 LCN12Q6JVE5 192 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 C9orf139Q6ZV77 190 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 SPTAN1Q13813 2472 aaKnown RBP11.11□□□□□ -0.63
GGA3-220ENST00000613421 SRD5A1P18405 259 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 DSCR9P59020 149 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 MS4A6AQ9H2W1 248 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 SPCS1Q9Y6A9 102 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 IGKV3OR2-268A0A0C4DH90 116 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 H3BUX3 64 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 C11orf53Q8IXP5 236 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 SLC25A2Q9BXI2 301 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 SHANK1Q9Y566 2161 aa11.11□□□□□ -0.63
GGA3-220ENST00000613421 C2orf88Q9BSF0 95 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 CYSLTR1Q9Y271 337 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 CD33P20138 364 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 ZNF562Q6V9R5 426 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 ZNF664Q8N3J9 261 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 BPESC1Q9GZL8 116 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 IGKCP01834 107 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 PDE6HQ13956 83 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 H3BUT2 72 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 SAA4P35542 130 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 NDPQ00604 133 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 IGFL4Q6B9Z1 124 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 C5orf30Q96GV9 206 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 GFRA4Q9GZZ7 299 aa11.1□□□□□ -0.63
GGA3-220ENST00000613421 Q0VG73 95 aa11.09□□□□□ -0.63
GGA3-220ENST00000613421 BEX4Q9NWD9 120 aaPredicted RBP11.09□□□□□ -0.63
GGA3-220ENST00000613421 WT1-ASQ06250 92 aa11.09□□□□□ -0.63
GGA3-220ENST00000613421 A0A1W2PRX2 142 aa11.09□□□□□ -0.63
GGA3-220ENST00000613421 GGTLC3B5MD39 225 aa11.09□□□□□ -0.63
GGA3-220ENST00000613421 TYMSP04818 313 aa11.09□□□□□ -0.63
GGA3-220ENST00000613421 PCNX2A6NKB5 2137 aa11.09□□□□□ -0.63
GGA3-220ENST00000613421 B4DSR2 109 aa11.08□□□□□ -0.63
GGA3-220ENST00000613421 ZNF492Q9P255 531 aa11.08□□□□□ -0.63
GGA3-220ENST00000613421 LAGE3Q14657 143 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 300.3 ms