RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C TIM50Q02776 476 aa3.6□□□□□ -1.83
SNU56YDR240C AI5_ALPHAQ9ZZX1 630 aa3.6□□□□□ -1.83
SNU56YDR240C HEM1P09950 548 aaPredicted RBP3.59□□□□□ -1.84
SNU56YDR240C RPS21AP0C0V8 87 aaKnown RBP3.59□□□□□ -1.84
SNU56YDR240C HMG2P12684 1045 aa3.59□□□□□ -1.84
SNU56YDR240C NUP1P20676 1076 aa3.59□□□□□ -1.84
SNU56YDR240C YHR033WP38690 423 aa3.59□□□□□ -1.84
SNU56YDR240C LRO1P40345 661 aa3.59□□□□□ -1.84
SNU56YDR240C YGR237CP50089 785 aa3.59□□□□□ -1.84
SNU56YDR240C PIP2P52960 996 aa3.59□□□□□ -1.84
SNU56YDR240C YGL081WP53156 320 aa3.59□□□□□ -1.84
SNU56YDR240C BUD17P53727 317 aa3.59□□□□□ -1.84
SNU56YDR240C GFD1Q04839 188 aaKnown RBP3.59□□□□□ -1.84
SNU56YDR240C ORM2Q06144 216 aa3.59□□□□□ -1.84
SNU56YDR240C FAP7Q12055 197 aaPredicted RBP3.59□□□□□ -1.84
SNU56YDR240C DGR2P32330 852 aa3.58□□□□□ -1.84
SNU56YDR240C APD1P38281 316 aa3.58□□□□□ -1.84
SNU56YDR240C XBP1P40489 647 aa3.58□□□□□ -1.84
SNU56YDR240C ULP2P40537 1034 aaPredicted RBP3.58□□□□□ -1.84
SNU56YDR240C RNR4P49723 345 aaKnown RBP3.58□□□□□ -1.84
SNU56YDR240C ARR3Q06598 404 aa3.58□□□□□ -1.84
SNU56YDR240C RPC34P32910 317 aa3.57□□□□□ -1.84
SNU56YDR240C CCL1P37366 393 aa3.57□□□□□ -1.84
SNU56YDR240C OPT1P40897 799 aa3.57□□□□□ -1.84
SNU56YDR240C YDL183CP48569 320 aa3.57□□□□□ -1.84
SNU56YDR240C USA1Q03714 838 aa3.57□□□□□ -1.84
SNU56YDR240C NOP56Q12460 504 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
SNU56YDR240C VPS33P20795 691 aa3.56□□□□□ -1.84
SNU56YDR240C AEP2P22136 580 aa3.56□□□□□ -1.84
SNU56YDR240C BRN1P38170 754 aa3.56□□□□□ -1.84
SNU56YDR240C YJL193WP39542 402 aa3.56□□□□□ -1.84
SNU56YDR240C DUG1P43616 481 aaKnown RBP3.56□□□□□ -1.84
SNU56YDR240C PEF1P53238 335 aa3.56□□□□□ -1.84
SNU56YDR240C DOS2P54858 310 aa3.56□□□□□ -1.84
SNU56YDR240C HXT4P32467 576 aa3.55□□□□□ -1.84
SNU56YDR240C EHT1P38295 451 aa3.55□□□□□ -1.84
SNU56YDR240C SRP68P38687 599 aaKnown RBP3.55□□□□□ -1.84
SNU56YDR240C PSA1P41940 361 aaKnown RBP3.55□□□□□ -1.84
SNU56YDR240C GAT1P43574 510 aa3.55□□□□□ -1.84
SNU56YDR240C SAP4P53036 818 aa3.55□□□□□ -1.84
SNU56YDR240C SQS1P53866 767 aaKnown RBP3.54□□□□□ -1.84
SNU56YDR240C SKY1Q03656 742 aa3.54□□□□□ -1.84
SNU56YDR240C RGT2Q12300 763 aa3.54□□□□□ -1.84
SNU56YDR240C RMP1Q12530 201 aa3.54□□□□□ -1.84
SNU56YDR240C VPS5Q92331 675 aa3.54□□□□□ -1.84
SNU56YDR240C RNR3P21672 869 aaKnown RBP3.54□□□□□ -1.84
SNU56YDR240C TSR4P25040 408 aa3.54□□□□□ -1.84
SNU56YDR240C GSY2P27472 705 aa3.54□□□□□ -1.84
SNU56YDR240C BEM3P32873 1128 aa3.54□□□□□ -1.84
SNU56YDR240C ATP23P53722 227 aa3.54□□□□□ -1.84
SNU56YDR240C YPR027CQ12079 277 aa3.54□□□□□ -1.84
SNU56YDR240C SEC12P11655 471 aa3.53□□□□□ -1.84
SNU56YDR240C MRPL9P31334 269 aa3.53□□□□□ -1.84
SNU56YDR240C RMA1P36001 430 aaKnown RBP3.53□□□□□ -1.84
SNU56YDR240C YPT10P38146 199 aa3.53□□□□□ -1.84
SNU56YDR240C GPP2P40106 250 aaKnown RBP3.53□□□□□ -1.84
SNU56YDR240C TDA10P42938 290 aa3.53□□□□□ -1.84
SNU56YDR240C YFL015CP43578 164 aa3.53□□□□□ -1.84
SNU56YDR240C NMD5P46970 1048 aa3.53□□□□□ -1.84
SNU56YDR240C STP1Q00947 519 aa3.53□□□□□ -1.84
SNU56YDR240C NGL1Q08213 363 aaKnown RBP3.53□□□□□ -1.84
SNU56YDR240C AAC1P04710 309 aa3.52□□□□□ -1.85
SNU56YDR240C AQY1P0CD91 305 aa3.52□□□□□ -1.85
SNU56YDR240C CWH43P25618 953 aa3.52□□□□□ -1.85
SNU56YDR240C DSS4P32601 143 aa3.52□□□□□ -1.85
SNU56YDR240C EXO1P39875 702 aa3.52□□□□□ -1.85
SNU56YDR240C PEA2P40091 420 aa3.52□□□□□ -1.85
SNU56YDR240C SNO3P43544 222 aa3.52□□□□□ -1.85
SNU56YDR240C IRC5P43610 853 aa3.52□□□□□ -1.85
SNU56YDR240C YJL043WP47053 257 aa3.52□□□□□ -1.85
SNU56YDR240C BPL1P48445 690 aaPredicted RBP3.52□□□□□ -1.85
SNU56YDR240C ERG13P54839 491 aaKnown RBP3.52□□□□□ -1.85
SNU56YDR240C BSP1Q06604 576 aa3.52□□□□□ -1.85
SNU56YDR240C SER1P33330 395 aaKnown RBP3.51□□□□□ -1.85
SNU56YDR240C WAR1Q03631 944 aa3.51□□□□□ -1.85
SNU56YDR240C SPN1Q06505 410 aaPredicted RBP3.51□□□□□ -1.85
SNU56YDR240C CRT10Q08226 957 aa3.51□□□□□ -1.85
SNU56YDR240C RDL1Q12305 139 aaKnown RBP3.51□□□□□ -1.85
SNU56YDR240C YEL076C-AP0CX16 216 aa3.5□□□□□ -1.85
SNU56YDR240C YLR464WP0CX17 216 aa3.5□□□□□ -1.85
SNU56YDR240C BET2P20133 325 aa3.5□□□□□ -1.85
SNU56YDR240C CBP3P21560 335 aa3.5□□□□□ -1.85
SNU56YDR240C ATP12P22135 325 aa3.5□□□□□ -1.85
SNU56YDR240C YEL076CP39971 216 aa3.5□□□□□ -1.85
SNU56YDR240C BST1P43571 1029 aa3.5□□□□□ -1.85
SNU56YDR240C NIT2P47016 307 aa3.5□□□□□ -1.85
SNU56YDR240C MPS1P54199 764 aa3.5□□□□□ -1.85
SNU56YDR240C FRE7Q12333 620 aa3.5□□□□□ -1.85
SNU56YDR240C RRP8P38961 392 aaKnown RBP3.49□□□□□ -1.85
SNU56YDR240C UBP12P39538 1254 aa3.49□□□□□ -1.85
SNU56YDR240C RAD26P40352 1085 aa3.49□□□□□ -1.85
SNU56YDR240C MTD1Q02046 320 aaKnown RBP3.49□□□□□ -1.85
SNU56YDR240C TRE2Q08693 809 aa3.49□□□□□ -1.85
SNU56YDR240C SEC3P33332 1336 aaKnown RBP3.49□□□□□ -1.85
SNU56YDR240C PCK1P10963 549 aa3.48□□□□□ -1.85
SNU56YDR240C ECM32P32644 1121 aaKnown RBP3.48□□□□□ -1.85
SNU56YDR240C SSP120P39931 234 aaKnown RBP3.48□□□□□ -1.85
SNU56YDR240C EMP65P40085 556 aa3.48□□□□□ -1.85
SNU56YDR240C MDR1P53258 950 aa3.48□□□□□ -1.85
SNU56YDR240C IDP3P53982 420 aaKnown RBP3.48□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms