RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SKILP12757 684 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 NTRK3Q16288 839 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 CPLX2Q6PUV4 134 aaKnown RBP14.81□□□□□ -0.04
LINC00540-203ENST00000631321 NBPF11Q86T75 865 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 WWC3Q9ULE0 1092 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 HPSEQ9Y251 543 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 ZBTB1Q9Y2K1 713 aa14.81□□□□□ -0.04
LINC00540-203ENST00000631321 ANKRD36CQ5JPF3 1778 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 FAM177BA6PVY3 158 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 WDHD1O75717 1129 aaPredicted RBP14.8□□□□□ -0.04
LINC00540-203ENST00000631321 PTPAQ15257 358 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 KRT40Q6A162 431 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 NYAP1Q6ZVC0 841 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 VPS37DQ86XT2 251 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 ZNF34Q8IZ26 560 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 LY9Q9HBG7 655 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 MROH7-TTC4A0A0A0MT08 1334 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 NID2Q14112 1375 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.8□□□□□ -0.04
LINC00540-203ENST00000631321 U2AF2P26368 475 aaKnown RBP eCLIP14.8□□□□□ -0.04
LINC00540-203ENST00000631321 CDC27P30260 824 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 IL6STP40189 918 aaPredicted RBP14.8□□□□□ -0.04
LINC00540-203ENST00000631321 LIFRP42702 1097 aa14.8□□□□□ -0.04
LINC00540-203ENST00000631321 ZRSR1Q15695 479 aaKnown RBP14.8□□□□□ -0.04
LINC00540-203ENST00000631321 FAM217BQ9NTX9 383 aaPredicted RBP14.8□□□□□ -0.04
LINC00540-203ENST00000631321 UBN2Q6ZU65 1347 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 STK36Q9NRP7 1315 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 B4E1Z4 1266 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 PATL2C9JE40 543 aaKnown RBP14.79□□□□□ -0.04
LINC00540-203ENST00000631321 NCAPHQ15003 741 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 JMYQ8N9B5 988 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 AIFM3Q96NN9 605 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 MAP3K14Q99558 947 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 TUBE1Q9UJT0 475 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 ITGB4P16144 1822 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 MYH3P11055 1940 aa14.79□□□□□ -0.04
LINC00540-203ENST00000631321 IKBKBO14920 756 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 ZBTB43O43298 467 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 APPP05067 770 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 DHX8Q14562 1220 aaKnown RBP14.78□□□□□ -0.04
LINC00540-203ENST00000631321 FILIP1Q7Z7B0 1213 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 AIDAQ96BJ3 306 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 SENP2Q9HC62 589 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 ARAP2Q8WZ64 1704 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 CEP135Q66GS9 1140 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 SPATA5Q8NB90 893 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 EPB41L4AQ9HCS5 686 aaPredicted RBP14.78□□□□□ -0.04
LINC00540-203ENST00000631321 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.78□□□□□ -0.04
LINC00540-203ENST00000631321 NHSL1Q5SYE7 1610 aa14.78□□□□□ -0.04
LINC00540-203ENST00000631321 RANBP6O60518 1105 aaKnown RBP14.77□□□□□ -0.04
LINC00540-203ENST00000631321 NCBP1Q09161 790 aaKnown RBP14.77□□□□□ -0.04
LINC00540-203ENST00000631321 DZIP3Q86Y13 1208 aaKnown RBP14.77□□□□□ -0.04
LINC00540-203ENST00000631321 PDCL2Q8N4E4 241 aa14.77□□□□□ -0.04
LINC00540-203ENST00000631321 USP27XA6NNY8 438 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 GOLGA8AA7E2F4 631 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 SLC5A1P13866 664 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 IARSP41252 1262 aaKnown RBP14.77□□□□□ -0.05
LINC00540-203ENST00000631321 SYKP43405 635 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 TPM4P67936 248 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 TMEM67Q5HYA8 995 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 RESP18Q5W5W9 173 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 SHC4Q6S5L8 630 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 IFNL3Q8IZI9 196 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 CCAR2Q8N163 923 aaKnown RBP14.77□□□□□ -0.05
LINC00540-203ENST00000631321 CCDC150Q8NCX0 1101 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 CCDC112Q8NEF3 446 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 BTG4Q9NY30 223 aa14.77□□□□□ -0.05
LINC00540-203ENST00000631321 MARCKSP29966 332 aaPredicted RBP14.76□□□□□ -0.05
LINC00540-203ENST00000631321 KCNJ6P48051 423 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 MAP3K12Q12852 859 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 MICU3Q86XE3 530 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 SMAP1Q8IYB5 467 aaPredicted RBP14.76□□□□□ -0.05
LINC00540-203ENST00000631321 PHKBQ93100 1093 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 FBXW7Q969H0 707 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.76□□□□□ -0.05
LINC00540-203ENST00000631321 ZMYND15Q9H091 742 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 CNNM2Q9H8M5 875 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 TIAM2Q8IVF5 1701 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 SLIT2O94813 1529 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 RXRAP19793 462 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 RASGRF1Q13972 1273 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 ELOA2Q8IYF1 753 aaPredicted RBP14.76□□□□□ -0.05
LINC00540-203ENST00000631321 MTA3Q9BTC8 594 aa14.76□□□□□ -0.05
LINC00540-203ENST00000631321 XPO4Q9C0E2 1151 aaKnown RBP14.76□□□□□ -0.05
LINC00540-203ENST00000631321 CUTAO60888 179 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 FMNL1O95466 1100 aaPredicted RBP14.75□□□□□ -0.05
LINC00540-203ENST00000631321 IFNAR1P17181 557 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 PTPN14Q15678 1187 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 PPP4R3BQ5MIZ7 849 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 IFNKQ9P0W0 207 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 ZSWIM5Q9P217 1185 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 TACC3Q9Y6A5 838 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 GSG1L2A8MUP6 293 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 BIN1O00499 593 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 MBD4O95243 580 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 NUP98P52948 1817 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 TRIM29Q14134 588 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 AKNAD1Q5T1N1 836 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 NFXL1Q6ZNB6 911 aa14.75□□□□□ -0.05
LINC00540-203ENST00000631321 PNPLA7Q6ZV29 1317 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms