RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ZNF384Q8TF68 577 aa23.15■■□□□ 1.3
SQSTM1-216ENST00000626660 TDRD3Q9H7E2 651 aaKnown RBP23.15■■□□□ 1.3
SQSTM1-216ENST00000626660 CLRN2A0PK11 232 aa23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 MAP4K4O95819 1239 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 CYP7A1P22680 504 aa23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 LRRFIP1Q32MZ4 808 aaKnown RBP23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 SPDYE2Q495Y8 402 aa23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 SLC9C2Q5TAH2 1124 aa23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 CDC37L1Q7L3B6 337 aa23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 KRT26Q7Z3Y9 468 aa23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 VEZTQ9HBM0 779 aa23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 ZNF70Q9UC06 446 aaPredicted RBP23.14■■□□□ 1.29
SQSTM1-216ENST00000626660 PDE6AP16499 860 aa23.13■■□□□ 1.29
SQSTM1-216ENST00000626660 BTDP43251 543 aa23.13■■□□□ 1.29
SQSTM1-216ENST00000626660 KBTBD3Q8NAB2 608 aa23.13■■□□□ 1.29
SQSTM1-216ENST00000626660 KLRG1Q96E93 195 aa23.13■■□□□ 1.29
SQSTM1-216ENST00000626660 GPR75-ASB3A0A0A6YYF3 556 aa23.12■■□□□ 1.29
SQSTM1-216ENST00000626660 BAG3O95817 575 aa23.12■■□□□ 1.29
SQSTM1-216ENST00000626660 TNFAIP1Q13829 316 aa23.12■■□□□ 1.29
SQSTM1-216ENST00000626660 GLIS2Q9BZE0 524 aaPredicted RBP23.12■■□□□ 1.29
SQSTM1-216ENST00000626660 USP40Q9NVE5 1235 aa23.12■■□□□ 1.29
SQSTM1-216ENST00000626660 TRIM6-TRIM34B2RNG4 842 aa23.11■■□□□ 1.29
SQSTM1-216ENST00000626660 HTRA3P83110 453 aa23.11■■□□□ 1.29
SQSTM1-216ENST00000626660 CDC42EP5Q6NZY7 148 aa23.11■■□□□ 1.29
SQSTM1-216ENST00000626660 USP48Q86UV5 1035 aa23.11■■□□□ 1.29
SQSTM1-216ENST00000626660 EVI5LQ96CN4 794 aa23.11■■□□□ 1.29
SQSTM1-216ENST00000626660 FSD1Q9BTV5 496 aa23.11■■□□□ 1.29
SQSTM1-216ENST00000626660 AK9Q5TCS8 1911 aa23.1■■□□□ 1.29
SQSTM1-216ENST00000626660 PLCG2P16885 1265 aa23.1■■□□□ 1.29
SQSTM1-216ENST00000626660 ADD2P35612 726 aa23.1■■□□□ 1.29
SQSTM1-216ENST00000626660 TNNI2P48788 182 aa23.1■■□□□ 1.29
SQSTM1-216ENST00000626660 CERS3Q8IU89 383 aa23.1■■□□□ 1.29
SQSTM1-216ENST00000626660 ZNF532Q9HCE3 1301 aa23.09■■□□□ 1.29
SQSTM1-216ENST00000626660 ZFYP08048 801 aaPredicted RBP23.09■■□□□ 1.29
SQSTM1-216ENST00000626660 FKBP1CQ5VVH2 108 aa23.09■■□□□ 1.29
SQSTM1-216ENST00000626660 AATFQ9NY61 560 aaKnown RBP eCLIP23.09■■□□□ 1.291e-6■□□□□ 10.1
SQSTM1-216ENST00000626660 TCP10L2B9ZVM9 353 aa23.08■■□□□ 1.29
SQSTM1-216ENST00000626660 ADM5C9JUS6 153 aa23.08■■□□□ 1.29
SQSTM1-216ENST00000626660 ITGBL1O95965 494 aaPredicted RBP23.08■■□□□ 1.29
SQSTM1-216ENST00000626660 PPP4CP60510 307 aa23.08■■□□□ 1.29
SQSTM1-216ENST00000626660 UBE3CQ15386 1083 aa23.08■■□□□ 1.29
SQSTM1-216ENST00000626660 ADGRA1Q86SQ6 560 aa23.08■■□□□ 1.29
SQSTM1-216ENST00000626660 RILPL2Q969X0 211 aa23.08■■□□□ 1.29
SQSTM1-216ENST00000626660 PPP2R3BQ9Y5P8 575 aa23.08■■□□□ 1.29
SQSTM1-216ENST00000626660 CACNB3P54284 484 aa23.07■■□□□ 1.28
SQSTM1-216ENST00000626660 TTC22Q5TAA0 569 aa23.07■■□□□ 1.28
SQSTM1-216ENST00000626660 MIGA1Q8NAN2 632 aa23.07■■□□□ 1.28
SQSTM1-216ENST00000626660 TRPM7Q96QT4 1865 aa23.07■■□□□ 1.28
SQSTM1-216ENST00000626660 MAGEB6P1A0A0J9YX57 407 aa23.06■■□□□ 1.28
SQSTM1-216ENST00000626660 TCRBV5S4A2TA0A5A2 114 aa23.06■■□□□ 1.28
SQSTM1-216ENST00000626660 TRAF5O00463 557 aa23.06■■□□□ 1.28
SQSTM1-216ENST00000626660 RNF113AO15541 343 aaKnown RBP23.06■■□□□ 1.28
SQSTM1-216ENST00000626660 TEX11Q8IYF3 940 aa23.06■■□□□ 1.28
SQSTM1-216ENST00000626660 DEFB129Q9H1M3 183 aa23.06■■□□□ 1.28
SQSTM1-216ENST00000626660 SCAF8Q9UPN6 1271 aaKnown RBP23.06■■□□□ 1.28
SQSTM1-216ENST00000626660 RHBDL3P58872 404 aa23.05■■□□□ 1.28
SQSTM1-216ENST00000626660 RASA3Q14644 834 aa23.05■■□□□ 1.28
SQSTM1-216ENST00000626660 FAM83AQ86UY5 434 aa23.05■■□□□ 1.28
SQSTM1-216ENST00000626660 TICAM2Q86XR7 235 aa23.05■■□□□ 1.28
SQSTM1-216ENST00000626660 JMYQ8N9B5 988 aa23.05■■□□□ 1.28
SQSTM1-216ENST00000626660 SH3RF3Q8TEJ3 882 aaPredicted RBP23.05■■□□□ 1.28
SQSTM1-216ENST00000626660 CAPN15O75808 1086 aa23.04■■□□□ 1.28
SQSTM1-216ENST00000626660 DYNLL1P63167 89 aaKnown RBP23.04■■□□□ 1.28
SQSTM1-216ENST00000626660 COL13A1Q5TAT6 717 aaPredicted RBP23.04■■□□□ 1.28
SQSTM1-216ENST00000626660 CDCA5Q96FF9 252 aa23.04■■□□□ 1.28
SQSTM1-216ENST00000626660 IDI2Q9BXS1 227 aa23.04■■□□□ 1.28
SQSTM1-216ENST00000626660 PASKQ96RG2 1323 aa23.04■■□□□ 1.28
SQSTM1-216ENST00000626660 RFX7Q2KHR2 1363 aa23.03■■□□□ 1.28
SQSTM1-216ENST00000626660 RGS3P49796 1198 aa23.03■■□□□ 1.28
SQSTM1-216ENST00000626660 APPBP2Q92624 585 aa23.03■■□□□ 1.28
SQSTM1-216ENST00000626660 ENTPD3O75355 529 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 WDHD1O75717 1129 aaPredicted RBP23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 NF2P35240 595 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 NFIAQ12857 509 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 PICALMQ13492 652 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 TNS4Q8IZW8 715 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 FAM151AQ8WW52 585 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 AIDAQ96BJ3 306 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 CRNKL1Q9BZJ0 848 aaKnown RBP23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 ZNF408Q9H9D4 720 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 CDK5RAP2Q96SN8 1893 aa23.02■■□□□ 1.28
SQSTM1-216ENST00000626660 CNTNAP1P78357 1384 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 NPM3O75607 178 aaKnown RBP23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 MBD4O95243 580 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 GSPT1P15170 499 aaKnown RBP23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 TCP10Q12799 353 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 SUPT20HL1Q3ZLR7 823 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 SLFNL1Q499Z3 407 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 DLK2Q6UY11 383 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 RIOK1Q9BRS2 568 aaKnown RBP23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 TMEM39BQ9GZU3 492 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 FAM198AQ9UFP1 575 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 FOCADQ5VW36 1801 aa23.01■■□□□ 1.27
SQSTM1-216ENST00000626660 CELF2O95319 508 aaKnown RBP23■■□□□ 1.27
SQSTM1-216ENST00000626660 CHGBP05060 677 aa23■■□□□ 1.27
SQSTM1-216ENST00000626660 FMR1Q06787 632 aaKnown RBP eCLIP23■■□□□ 1.273e-7■□□□□ 9.8
SQSTM1-216ENST00000626660 PRAMEF18Q5VWM3 479 aa23■■□□□ 1.27
SQSTM1-216ENST00000626660 SKAP1Q86WV1 359 aa23■■□□□ 1.27
SQSTM1-216ENST00000626660 TGFBRAP1Q8WUH2 860 aa23■■□□□ 1.27
SQSTM1-216ENST00000626660 ARMT1Q9H993 441 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms