RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 SPTLC2O15270 562 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 APPP05067 770 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 GNAT2P19087 354 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 ATP6V1AP38606 617 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 ITPK1Q13572 414 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 DHX40Q8IX18 779 aaKnown RBP10.98□□□□□ -0.65
PDPN-212ENST00000621990 MAGEB6Q8N7X4 407 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 MARCH10Q8NA82 808 aaPredicted RBP10.98□□□□□ -0.65
PDPN-212ENST00000621990 SPC24Q8NBT2 197 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 MRFAP1L1Q96HT8 127 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 MTA3Q9BTC8 594 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 CNNM2Q9H8M5 875 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 SEC31BQ9NQW1 1179 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 ANO10Q9NW15 660 aa10.98□□□□□ -0.65
PDPN-212ENST00000621990 GSG1L2A8MUP6 293 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 B4E1Z4 1266 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 NDUFA8P51970 172 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 AXDND1Q5T1B0 1012 aaPredicted RBP10.97□□□□□ -0.65
PDPN-212ENST00000621990 ANO1Q5XXA6 986 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 TRIM5Q9C035 493 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 FAM217BQ9NTX9 383 aaPredicted RBP10.97□□□□□ -0.65
PDPN-212ENST00000621990 ZNF804BA4D1E1 1349 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 SPATA31A5Q5VU36 1347 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 SPATA31A7Q8IWB4 1347 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 MBD4O95243 580 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 POLR3DP05423 398 aaPredicted RBP10.97□□□□□ -0.65
PDPN-212ENST00000621990 PTGS1P23219 599 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 CDC27P30260 824 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 GTF2F1P35269 517 aaKnown RBP eCLIP10.97□□□□□ -0.65
PDPN-212ENST00000621990 STK38Q15208 465 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 BARGINQ6ZT62 677 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 C17orf53Q8N3J3 647 aaPredicted RBP10.97□□□□□ -0.65
PDPN-212ENST00000621990 MYRIPQ8NFW9 859 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 STAG1Q8WVM7 1258 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 BPIFA3Q9BQP9 254 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 SENP2Q9HC62 589 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 GJB4Q9NTQ9 266 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 TACC3Q9Y6A5 838 aa10.97□□□□□ -0.65
PDPN-212ENST00000621990 RGL2O15211 777 aa10.96□□□□□ -0.65
PDPN-212ENST00000621990 ZBTB43O43298 467 aa10.96□□□□□ -0.65
PDPN-212ENST00000621990 CMA1P23946 247 aa10.96□□□□□ -0.65
PDPN-212ENST00000621990 U2AF2P26368 475 aaKnown RBP eCLIP10.96□□□□□ -0.65
PDPN-212ENST00000621990 SLC39A14Q15043 492 aa10.96□□□□□ -0.65
PDPN-212ENST00000621990 SCN7AQ01118 1682 aa10.96□□□□□ -0.65
PDPN-212ENST00000621990 FAM237AA0A1B0GTK4 181 aa10.96□□□□□ -0.66
PDPN-212ENST00000621990 IGHMBP2P38935 993 aaKnown RBP10.96□□□□□ -0.66
PDPN-212ENST00000621990 AKNAD1Q5T1N1 836 aa10.96□□□□□ -0.66
PDPN-212ENST00000621990 CPLX2Q6PUV4 134 aaKnown RBP10.96□□□□□ -0.66
PDPN-212ENST00000621990 CCDC186Q7Z3E2 898 aa10.96□□□□□ -0.66
PDPN-212ENST00000621990 RAB11FIP4Q86YS3 637 aa10.96□□□□□ -0.66
PDPN-212ENST00000621990 ALG1Q9BT22 464 aa10.96□□□□□ -0.66
PDPN-212ENST00000621990 KRT23Q9C075 422 aa10.96□□□□□ -0.66
PDPN-212ENST00000621990 NAPBQ9H115 298 aa10.96□□□□□ -0.66
PDPN-212ENST00000621990 ZSWIM5Q9P217 1185 aa10.96□□□□□ -0.66
PDPN-212ENST00000621990 LTBP4Q8N2S1 1624 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 CACNA1SQ13698 1873 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 A0A1B0GVL5 298 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 GOLGA6L19H0YKK7 550 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 RANBP6O60518 1105 aaKnown RBP10.95□□□□□ -0.66
PDPN-212ENST00000621990 PPP6R2O75170 966 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 RCAN1P53805 252 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 KRT40Q6A162 431 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 CLEC4GQ6UXB4 293 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 SYNE3Q6ZMZ3 975 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 VPS37DQ86XT2 251 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 CEP57L1Q8IYX8 460 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 ARMT1Q9H993 441 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 KIAA1468Q9P260 1216 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 NIP7Q9Y221 180 aaKnown RBP eCLIP10.95□□□□□ -0.66
PDPN-212ENST00000621990 SNAP23O00161 211 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 BCAMP50895 628 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 CHRNDQ07001 517 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 HSP90AA2PQ14568 343 aaPredicted RBP10.95□□□□□ -0.66
PDPN-212ENST00000621990 PTPAQ15257 358 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 SF3A1Q15459 793 aaKnown RBP10.95□□□□□ -0.66
PDPN-212ENST00000621990 TMEM67Q5HYA8 995 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 TIGD1Q96MW7 591 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 AIFM3Q96NN9 605 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 MAP3K14Q99558 947 aa10.95□□□□□ -0.66
PDPN-212ENST00000621990 NAT10Q9H0A0 1025 aaKnown RBP10.95□□□□□ -0.66
PDPN-212ENST00000621990 RBM6P78332 1123 aaKnown RBP10.94□□□□□ -0.66
PDPN-212ENST00000621990 LCORLQ8N3X6 602 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 SMARCC1Q92922 1105 aaPredicted RBP10.94□□□□□ -0.66
PDPN-212ENST00000621990 CDC5LQ99459 802 aaKnown RBP10.94□□□□□ -0.66
PDPN-212ENST00000621990 NACAP1Q9BZK3 213 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.94□□□□□ -0.66
PDPN-212ENST00000621990 CLIP2Q9UDT6 1046 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 NRBP1Q9UHY1 535 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 HPSEQ9Y251 543 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 MROH7-TTC4A0A0A0MT08 1334 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 GOLGA8AA7E2F4 631 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 WDHD1O75717 1129 aaPredicted RBP10.94□□□□□ -0.66
PDPN-212ENST00000621990 FMNL1O95466 1100 aaPredicted RBP10.94□□□□□ -0.66
PDPN-212ENST00000621990 IFNAR1P17181 557 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 CTDSPL2Q05D32 466 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 MICU3Q86XE3 530 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 ZNF652Q9Y2D9 606 aa10.94□□□□□ -0.66
PDPN-212ENST00000621990 COL1A1P02452 1464 aaPredicted RBP10.94□□□□□ -0.66
PDPN-212ENST00000621990 ZNF202O95125 648 aa10.93□□□□□ -0.66
PDPN-212ENST00000621990 PFKFB1P16118 471 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms