RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-223	ENST00000615442	TDRD3	Q9H7E2	651 aa	Known RBP	12.7	□□□□□ -0.38
PVT1-223	ENST00000615442	USP40	Q9NVE5	1235 aa		12.7	□□□□□ -0.38
PVT1-223	ENST00000615442	ZNF70	Q9UC06	446 aa	Predicted RBP	12.7	□□□□□ -0.38
PVT1-223	ENST00000615442	ZNF532	Q9HCE3	1301 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	TCRBV5S4A2T	A0A5A2	114 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	PLCG2	P16885	1265 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	FKBP1C	Q5VVH2	108 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	CDC42EP5	Q6NZY7	148 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	CDC37L1	Q7L3B6	337 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	ADGRA1	Q86SQ6	560 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	APOBEC3F	Q8IUX4	373 aa	Known RBP	12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	RILPL2	Q969X0	211 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	TMOD2	Q9NZR1	351 aa		12.69	□□□□□ -0.38
PVT1-223	ENST00000615442	MYH13	Q9UKX3	1938 aa		12.68	□□□□□ -0.38
PVT1-223	ENST00000615442	ASTN2	O75129	1339 aa	Predicted RBP	12.68	□□□□□ -0.38
PVT1-223	ENST00000615442	FSTL1	Q12841	308 aa		12.68	□□□□□ -0.38
PVT1-223	ENST00000615442	TNFAIP1	Q13829	316 aa		12.68	□□□□□ -0.38
PVT1-223	ENST00000615442	SULF1	Q8IWU6	871 aa		12.68	□□□□□ -0.38
PVT1-223	ENST00000615442	GGA3	Q9NZ52	723 aa		12.68	□□□□□ -0.38
PVT1-223	ENST00000615442	MAGEB6P1	A0A0J9YX57	407 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	CLRN2	A0PK11	232 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	NPM3	O75607	178 aa	Known RBP	12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	GSPT1	P15170	499 aa	Known RBP	12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	SDS	P20132	328 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	TNNI2	P48788	182 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	RGS3	P49796	1198 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	RHBDL3	P58872	404 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	MAP1S	Q66K74	1059 aa	Predicted RBP	12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	FAM83A	Q86UY5	434 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	APPBP2	Q92624	585 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	RIOK1	Q9BRS2	568 aa	Known RBP	12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	IDI2	Q9BXS1	227 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	AATF	Q9NY61	560 aa	Known RBP eCLIP	12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	PPP2R3B	Q9Y5P8	575 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	GTF3C3	Q9Y5Q9	886 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	RFX7	Q2KHR2	1363 aa		12.67	□□□□□ -0.38
PVT1-223	ENST00000615442	ADAMTSL1	Q8N6G6	1762 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	HIP1	O00291	1037 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	ITGBL1	O95965	494 aa	Predicted RBP	12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	BMP2KL	Q5H9B9	411 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	KRT26	Q7Z3Y9	468 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	USP48	Q86UV5	1035 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	SKAP1	Q86WV1	359 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	MIGA1	Q8NAN2	632 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	DEFB129	Q9H1M3	183 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	VEZT	Q9HBM0	779 aa		12.66	□□□□□ -0.38
PVT1-223	ENST00000615442	TCP10L2	B9ZVM9	353 aa		12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	ENTPD3	O75355	529 aa		12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	WDHD1	O75717	1129 aa	Predicted RBP	12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	DYNLL1	P63167	89 aa	Known RBP	12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	RASA3	Q14644	834 aa		12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	SLFNL1	Q499Z3	407 aa		12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	ZMYM1	Q5SVZ6	1142 aa		12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	TEX11	Q8IYF3	940 aa		12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	FAM151A	Q8WW52	585 aa		12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	GLIS2	Q9BZE0	524 aa	Predicted RBP	12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	PUS7L	Q9H0K6	701 aa	Known RBP	12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	HELLS	Q9NRZ9	838 aa		12.65	□□□□□ -0.38
PVT1-223	ENST00000615442	ADM5	C9JUS6	153 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	CHGB	P05060	677 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	CACNB3	P54284	484 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	NFIA	Q12857	509 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	OSBP2	Q969R2	916 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	AIDA	Q96BJ3	306 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	CRNKL1	Q9BZJ0	848 aa	Known RBP	12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	FAM198A	Q9UFP1	575 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	DOCK2	Q92608	1830 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	MAST2	Q6P0Q8	1798 aa		12.64	□□□□□ -0.39
PVT1-223	ENST00000615442	MBD4	O95243	580 aa		12.63	□□□□□ -0.39
PVT1-223	ENST00000615442	SUPT20HL1	Q3ZLR7	823 aa		12.63	□□□□□ -0.39
PVT1-223	ENST00000615442	MCMDC2	Q4G0Z9	681 aa		12.63	□□□□□ -0.39
PVT1-223	ENST00000615442	LCORL	Q8N3X6	602 aa		12.63	□□□□□ -0.39
PVT1-223	ENST00000615442	STRBP	Q96SI9	672 aa	Known RBP	12.63	□□□□□ -0.39
PVT1-223	ENST00000615442	ARMT1	Q9H993	441 aa		12.63	□□□□□ -0.39
PVT1-223	ENST00000615442	DIAPH3	Q9NSV4	1193 aa		12.63	□□□□□ -0.39
PVT1-223	ENST00000615442	CNTNAP1	P78357	1384 aa		12.63	□□□□□ -0.39
PVT1-223	ENST00000615442	PASK	Q96RG2	1323 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	GNAT2	P19087	354 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	USP5	P45974	858 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	TCP10	Q12799	353 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	TGFBRAP1	Q8WUH2	860 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	HOOK2	Q96ED9	719 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	CDCA5	Q96FF9	252 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	TEPSIN	Q96N21	525 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	DDX4	Q9NQI0	724 aa	Known RBP	12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	ATP8A2	Q9NTI2	1148 aa		12.62	□□□□□ -0.39
PVT1-223	ENST00000615442	SCAF8	Q9UPN6	1271 aa	Known RBP	12.62	□□□□□ -0.39
PVT1-223	ENST00000615442		M0R2C6	588 aa		12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	TRAF5	O00463	557 aa		12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	GPAA1	O43292	621 aa		12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	CHML	P26374	656 aa		12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	NF2	P35240	595 aa		12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	MFAP1	P55081	439 aa	Known RBP	12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	NMI	Q13287	307 aa	Predicted RBP	12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	PICALM	Q13492	652 aa		12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	RUFY2	Q8WXA3	655 aa		12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	FAM227B	Q96M60	508 aa		12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	SEC62	Q99442	399 aa	Known RBP	12.61	□□□□□ -0.39
PVT1-223	ENST00000615442	TMEM39B	Q9GZU3	492 aa		12.61	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 28 ms