RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 USP17L12C9JPN9 530 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 USP17L21D6R901 530 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 PARP1P09874 1014 aaKnown RBP11.36□□□□□ -0.59
LIG3-216ENST00000593099 ZNF771Q7L3S4 317 aaPredicted RBP11.36□□□□□ -0.59
LIG3-216ENST00000593099 SP8Q8IXZ3 490 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 CHRNA5P30532 468 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 NAPAP54920 295 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 PODNQ7Z5L7 613 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.36□□□□□ -0.59
LIG3-216ENST00000593099 EPS15P42566 896 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 STIM1Q13586 685 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 SMARCC2Q8TAQ2 1214 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 GJB2P29033 226 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 MTX1Q13505 466 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 POLA2Q14181 598 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 ZKSCAN3Q9BRR0 538 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 ALG1Q9BT22 464 aa11.36□□□□□ -0.59
LIG3-216ENST00000593099 ADCY9O60503 1353 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 LETM1O95202 739 aaPredicted RBP11.35□□□□□ -0.59
LIG3-216ENST00000593099 GOLGA6L1Q8N7Z2 621 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 NECAB1Q8N987 351 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 DSCC1Q9BVC3 393 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 A0A0G2JLW4 131 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 PPFIA3O75145 1194 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 CEP57L1Q8IYX8 460 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 SCAND2PQ9GZW5 306 aaPredicted RBP11.35□□□□□ -0.59
LIG3-216ENST00000593099 C6orf50Q9HD87 102 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 RNF181Q9P0P0 153 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 RBM25P49756 843 aaKnown RBP11.35□□□□□ -0.59
LIG3-216ENST00000593099 SF3B3Q15393 1217 aaKnown RBP11.35□□□□□ -0.59
LIG3-216ENST00000593099 SUPT20HL1Q3ZLR7 823 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 INTS5Q6P9B9 1019 aaKnown RBP11.35□□□□□ -0.59
LIG3-216ENST00000593099 BBXQ8WY36 941 aaPredicted RBP11.35□□□□□ -0.59
LIG3-216ENST00000593099 MTFR1LQ9H019 292 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 AS3MTQ9HBK9 375 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 RBM28Q9NW13 759 aaKnown RBP11.35□□□□□ -0.59
LIG3-216ENST00000593099 CCDC39Q9UFE4 941 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 CLRN2A0PK11 232 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 PLSCR1O15162 318 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 GRIN3BO60391 1043 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 CALML3P27482 149 aa11.35□□□□□ -0.59
LIG3-216ENST00000593099 COL23A1Q86Y22 540 aaPredicted RBP11.35□□□□□ -0.59
LIG3-216ENST00000593099 ZYXQ15942 572 aaKnown RBP11.34□□□□□ -0.59
LIG3-216ENST00000593099 TMX3Q96JJ7 454 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 GPR101Q96P66 508 aaPredicted RBP11.34□□□□□ -0.59
LIG3-216ENST00000593099 STAP2Q9UGK3 403 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 SLC27A2O14975 620 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 IPO7O95373 1038 aaKnown RBP11.34□□□□□ -0.59
LIG3-216ENST00000593099 PPP4R3AQ6IN85 833 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 TANGO6Q9C0B7 1094 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 MYO3BQ8WXR4 1341 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 USP17L8P0C7I0 530 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 TFAP4Q01664 338 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 APOBRQ0VD83 1088 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 SCLT1Q96NL6 688 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 USP26Q9BXU7 913 aa11.34□□□□□ -0.59
LIG3-216ENST00000593099 TLR7Q9NYK1 1049 aaKnown RBP11.34□□□□□ -0.59
LIG3-216ENST00000593099 KDM2BQ8NHM5 1336 aa11.33□□□□□ -0.59
LIG3-216ENST00000593099 SPDYE3A6NKU9 549 aa11.33□□□□□ -0.59
LIG3-216ENST00000593099 SLC1A4P43007 532 aa11.33□□□□□ -0.59
LIG3-216ENST00000593099 PPARAQ07869 468 aa11.33□□□□□ -0.59
LIG3-216ENST00000593099 PLA2G12BQ9BX93 195 aa11.33□□□□□ -0.59
LIG3-216ENST00000593099 GPCPD1Q9NPB8 672 aa11.33□□□□□ -0.59
LIG3-216ENST00000593099 ATP8A2Q9NTI2 1148 aa11.33□□□□□ -0.59
LIG3-216ENST00000593099 SASH1O94885 1247 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 AKNAD1Q5T1N1 836 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 RUFY3Q7L099 469 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 IFNL3Q8IZI9 196 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 CTDSPL2Q05D32 466 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 TBC1D2Q9BYX2 928 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 CD209Q9NNX6 404 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 ZNF277Q9NRM2 450 aaPredicted RBP11.33□□□□□ -0.6
LIG3-216ENST00000593099 TCP11L1Q9NUJ3 509 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 MAGEC2Q9UBF1 373 aaPredicted RBP11.33□□□□□ -0.6
LIG3-216ENST00000593099 ANGEL1Q9UNK9 670 aaKnown RBP11.33□□□□□ -0.6
LIG3-216ENST00000593099 GNA11P29992 359 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 IRX3P78415 501 aaPredicted RBP11.33□□□□□ -0.6
LIG3-216ENST00000593099 SDR42E1Q8WUS8 393 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 ZMYND15Q9H091 742 aa11.33□□□□□ -0.6
LIG3-216ENST00000593099 DACH1Q9UI36 760 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 IVNS1ABPQ9Y6Y0 642 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 STX6O43752 255 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 GYS1P13807 737 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 GOPCQ9HD26 462 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 SAMM50Q9Y512 469 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 ADGRB2O60241 1585 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 ECE2O60344 883 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 RASGRF1Q13972 1273 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 AOC3Q16853 763 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 CAVIN1Q6NZI2 390 aaKnown RBP11.32□□□□□ -0.6
LIG3-216ENST00000593099 TNMDQ9H2S6 317 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 NTSR2O95665 410 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 CERKLQ49MI3 558 aaPredicted RBP11.32□□□□□ -0.6
LIG3-216ENST00000593099 CNKSR2Q8WXI2 1034 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 BCL9O00512 1426 aa11.32□□□□□ -0.6
LIG3-216ENST00000593099 ZBED4O75132 1171 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 BMP15O95972 392 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 AK2P54819 239 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 GPSM2P81274 684 aa11.31□□□□□ -0.6
LIG3-216ENST00000593099 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms