RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MASTLQ96GX5 879 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 SH2B1Q9NRF2 756 aaPredicted RBP9.49□□□□□ -0.89
VPS39-213ENST00000570062 ANKIB1Q9P2G1 1089 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 LRP2BPQ9P2M1 347 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 RABGEF1Q9UJ41 708 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 RGPD3A6NKT7 1758 aaPredicted RBP9.49□□□□□ -0.89
VPS39-213ENST00000570062 RGPD4Q7Z3J3 1758 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 BRWD3Q6RI45 1802 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 TAF1LQ8IZX4 1826 aa9.49□□□□□ -0.89
VPS39-213ENST00000570062 COL24A1Q17RW2 1714 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 SLC27A2O14975 620 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 IDH1O75874 414 aaKnown RBP9.48□□□□□ -0.89
VPS39-213ENST00000570062 BCAMP50895 628 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 GSTO1P78417 241 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 ALX1Q15699 326 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 ZNF827Q17R98 1081 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 PROX2Q3B8N5 592 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 STYK1Q6J9G0 422 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 TYW1BQ6NUM6 668 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 BLOC1S2Q6QNY1 142 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 RUFY3Q7L099 469 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 SLF2Q8IX21 1173 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 AIDAQ96BJ3 306 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 FAM84BQ96KN1 310 aaPredicted RBP9.48□□□□□ -0.89
VPS39-213ENST00000570062 GGA1Q9UJY5 639 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 LIMCH1Q9UPQ0 1083 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.48□□□□□ -0.89
VPS39-213ENST00000570062 PNPLA7Q6ZV29 1317 aa9.48□□□□□ -0.89
VPS39-213ENST00000570062 MYH3P11055 1940 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 PATL2C9JE40 543 aaKnown RBP9.47□□□□□ -0.89
VPS39-213ENST00000570062 H0YIN7 160 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 ZNF213O14771 459 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 RGS20O76081 388 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 MMP10P09238 476 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 SRGNP10124 158 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 HSPD1P10809 573 aaKnown RBP9.47□□□□□ -0.89
VPS39-213ENST00000570062 PCP11498 1178 aaKnown RBP9.47□□□□□ -0.89
VPS39-213ENST00000570062 COL9A1P20849 921 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 PTH1RQ03431 593 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 DDR1Q08345 913 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 TRDNQ13061 729 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 RASGRF1Q13972 1273 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 SMIM5Q71RC9 77 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 TBC1D22AQ8WUA7 517 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 CNKSR1Q969H4 720 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 EDC3Q96F86 508 aaKnown RBP9.47□□□□□ -0.89
VPS39-213ENST00000570062 NEK1Q96PY6 1258 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 EYA3Q99504 573 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 ANTXR1Q9H6X2 564 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 PDRG1Q9NUG6 133 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 ATP6V0A2Q9Y487 856 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 ZMYM6O95789 1325 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 SALL1Q9NSC2 1324 aa9.47□□□□□ -0.89
VPS39-213ENST00000570062 GPAA1O43292 621 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 LDHCP07864 332 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 PDE6AP16499 860 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 CASTP20810 708 aaKnown RBP9.46□□□□□ -0.9
VPS39-213ENST00000570062 SLC4A3P48751 1232 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 EN1Q05925 392 aaPredicted RBP9.46□□□□□ -0.9
VPS39-213ENST00000570062 CUL4AQ13619 759 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 SCARF1Q14162 830 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 EZH2Q15910 746 aaKnown RBP9.46□□□□□ -0.9
VPS39-213ENST00000570062 GIMAP6Q6P9H5 292 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 ZNF589Q86UQ0 364 aaPredicted RBP9.46□□□□□ -0.9
VPS39-213ENST00000570062 FBXL16Q8N461 479 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 ANKK1Q8NFD2 765 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 OSBP2Q969R2 916 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 JAKMIP1Q96N16 626 aaKnown RBP9.46□□□□□ -0.9
VPS39-213ENST00000570062 MTA3Q9BTC8 594 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 ANP32EQ9BTT0 268 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 PALD1Q9ULE6 856 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 SUGT1Q9Y2Z0 365 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 MAST3O60307 1309 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 WDR19Q8NEZ3 1342 aa9.46□□□□□ -0.9
VPS39-213ENST00000570062 DDX60Q8IY21 1712 aaKnown RBP9.45□□□□□ -0.9
VPS39-213ENST00000570062 PPEF1O14829 653 aaPredicted RBP9.45□□□□□ -0.9
VPS39-213ENST00000570062 RPS6KB1P23443 525 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 DHX32Q7L7V1 743 aaKnown RBP9.45□□□□□ -0.9
VPS39-213ENST00000570062 SUPT20HQ8NEM7 779 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 TMX3Q96JJ7 454 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 COA1Q9GZY4 146 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 IL25Q9H293 177 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 RNF41Q9H4P4 317 aaPredicted RBP9.45□□□□□ -0.9
VPS39-213ENST00000570062 CNNM2Q9H8M5 875 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 PIH1D3Q9NQM4 214 aaKnown RBP9.45□□□□□ -0.9
VPS39-213ENST00000570062 RAI14Q9P0K7 980 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 NSFL1CQ9UNZ2 370 aaKnown RBP9.45□□□□□ -0.9
VPS39-213ENST00000570062 ZNF532Q9HCE3 1301 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 TUBGCP6Q96RT7 1819 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 UBR3Q6ZT12 1888 aa9.45□□□□□ -0.9
VPS39-213ENST00000570062 UTRNP46939 3433 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 TCRBV5S4A2TA0A5A2 114 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 BAG3O95817 575 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 GYG1P46976 350 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 FGD1P98174 961 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 R3HDM1Q15032 1099 aaKnown RBP9.44□□□□□ -0.9
VPS39-213ENST00000570062 NAA16Q6N069 864 aaPredicted RBP9.44□□□□□ -0.9
VPS39-213ENST00000570062 MPNDQ8N594 471 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 MAGEB6Q8N7X4 407 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 TDRD7Q8NHU6 1098 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms