RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 ADGRA1Q86SQ6 560 aa18.04■□□□□ 0.48
VIPAS39-210ENST00000557466 APOBEC3FQ8IUX4 373 aaKnown RBP18.04■□□□□ 0.48
VIPAS39-210ENST00000557466 PLEKHM2Q8IWE5 1019 aa18.04■□□□□ 0.48
VIPAS39-210ENST00000557466 SULF1Q8IWU6 871 aa18.04■□□□□ 0.48
VIPAS39-210ENST00000557466 MAGEB6Q8N7X4 407 aa18.04■□□□□ 0.48
VIPAS39-210ENST00000557466 FAM163AQ96GL9 167 aaPredicted RBP18.04■□□□□ 0.48
VIPAS39-210ENST00000557466 VEZTQ9HBM0 779 aa18.04■□□□□ 0.48
VIPAS39-210ENST00000557466 IGSF3O75054 1194 aa18.03■□□□□ 0.48
VIPAS39-210ENST00000557466 MAP4K4O95819 1239 aaPredicted RBP18.03■□□□□ 0.48
VIPAS39-210ENST00000557466 LDHCP07864 332 aa18.03■□□□□ 0.48
VIPAS39-210ENST00000557466 BTDP43251 543 aa18.03■□□□□ 0.48
VIPAS39-210ENST00000557466 CACNB3P54284 484 aa18.03■□□□□ 0.48
VIPAS39-210ENST00000557466 ERICH6BQ5W0A0 696 aa18.03■□□□□ 0.48
VIPAS39-210ENST00000557466 CDC42EP5Q6NZY7 148 aa18.03■□□□□ 0.48
VIPAS39-210ENST00000557466 RFX7Q2KHR2 1363 aa18.03■□□□□ 0.48
VIPAS39-210ENST00000557466 GPR75-ASB3A0A0A6YYF3 556 aa18.02■□□□□ 0.48
VIPAS39-210ENST00000557466 PDE6AP16499 860 aa18.02■□□□□ 0.48
VIPAS39-210ENST00000557466 CYP7A1P22680 504 aa18.02■□□□□ 0.48
VIPAS39-210ENST00000557466 TCP10L2B9ZVM9 353 aa18.01■□□□□ 0.47
VIPAS39-210ENST00000557466 OSBPL3Q9H4L5 887 aa18.01■□□□□ 0.47
VIPAS39-210ENST00000557466 TMOD2Q9NZR1 351 aa18.01■□□□□ 0.47
VIPAS39-210ENST00000557466 CNTNAP1P78357 1384 aa18.01■□□□□ 0.47
VIPAS39-210ENST00000557466 CHGBP05060 677 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 RHBDL3P58872 404 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 SLC9C2Q5TAH2 1124 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 KBTBD3Q8NAB2 608 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 CDCA5Q96FF9 252 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 USP40Q9NVE5 1235 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 PPP4R2Q9NY27 417 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 AATFQ9NY61 560 aaKnown RBP eCLIP18■□□□□ 0.47
VIPAS39-210ENST00000557466 NAV1Q8NEY1 1877 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 SSC5DA1L4H1 1573 aa18■□□□□ 0.47
VIPAS39-210ENST00000557466 ZNF532Q9HCE3 1301 aa17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 DDX60LQ5H9U9 1706 aaKnown RBP17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 TCRBV5S4A2TA0A5A2 114 aa17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 ADD2P35612 726 aa17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 TNFAIP1Q13829 316 aa17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 SLFNL1Q499Z3 407 aa17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 PRAMEF18Q5VWM3 479 aa17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 DEFB129Q9H1M3 183 aa17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 PAPPA2Q9BXP8 1791 aa17.99■□□□□ 0.47
VIPAS39-210ENST00000557466 DYNLL1P63167 89 aaKnown RBP17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 NFIAQ12857 509 aa17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 RASA3Q14644 834 aa17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 FKBP1CQ5VVH2 108 aa17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 TMED8Q6PL24 325 aaPredicted RBP17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 MIGA1Q8NAN2 632 aa17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 NOL10Q9BSC4 688 aaKnown RBP17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 ZNF408Q9H9D4 720 aa17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 PPP2R3BQ9Y5P8 575 aa17.98■□□□□ 0.47
VIPAS39-210ENST00000557466 OTOFQ9HC10 1997 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 RPAP1Q9BWH6 1393 aaPredicted RBP17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 WDHD1O75717 1129 aaPredicted RBP17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 BAG3O95817 575 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 TNNI2P48788 182 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 APLP1P51693 650 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 PPP4CP60510 307 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 SKAP1Q86WV1 359 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 SH3RF3Q8TEJ3 882 aaPredicted RBP17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 FSD1Q9BTV5 496 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 FAM198AQ9UFP1 575 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 MYH1P12882 1939 aa17.97■□□□□ 0.47
VIPAS39-210ENST00000557466 SIPA1L1O43166 1804 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 CELF2O95319 508 aaKnown RBP17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 HSPA6P17066 643 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 RGS3P49796 1198 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 UBE3CQ15386 1083 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 CST9Q5W186 159 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 ZSCAN25Q6NSZ9 544 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 FAM83AQ86UY5 434 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 CDAN1Q8IWY9 1227 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 EVI5LQ96CN4 794 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 RIOK1Q9BRS2 568 aaKnown RBP17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 IDI2Q9BXS1 227 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 TMEM39BQ9GZU3 492 aa17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 DDX4Q9NQI0 724 aaKnown RBP17.96■□□□□ 0.47
VIPAS39-210ENST00000557466 PLCG2P16885 1265 aa17.95■□□□□ 0.46
VIPAS39-210ENST00000557466 TCP10Q12799 353 aa17.95■□□□□ 0.46
VIPAS39-210ENST00000557466 TEX11Q8IYF3 940 aa17.95■□□□□ 0.46
VIPAS39-210ENST00000557466 TEPSINQ96N21 525 aa17.95■□□□□ 0.46
VIPAS39-210ENST00000557466 CEP350Q5VT06 3117 aa17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 MAGEB6P1A0A0J9YX57 407 aa17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 TRIM6-TRIM34B2RNG4 842 aa17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 RNF113AO15541 343 aaKnown RBP17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 GSPT1P15170 499 aaKnown RBP17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 PICALMQ13492 652 aa17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 TTC22Q5TAA0 569 aa17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 NBPF12Q5TAG4 269 aaPredicted RBP17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 COL2A1P02458 1487 aaPredicted RBP17.94■□□□□ 0.46
VIPAS39-210ENST00000557466 TMEM88BA6NKF7 163 aa17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 ENTPD3O75355 529 aa17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 ZFYP08048 801 aaPredicted RBP17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 CERS3Q8IU89 383 aa17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 ZFPM1Q8IX07 1006 aa17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 LCORLQ8N3X6 602 aa17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 FAM151AQ8WW52 585 aa17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 APPBP2Q92624 585 aa17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 BAZ2AQ9UIF9 1905 aaKnown RBP17.93■□□□□ 0.46
VIPAS39-210ENST00000557466 MBD4O95243 580 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms