RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 IGKV5-2P06315 115 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 ZBTB48P10074 688 aaPredicted RBP12.81□□□□□ -0.36
SCFD1-220ENST00000556486 DLGAP5Q15398 846 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 SLC9C1Q4G0N8 1177 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 CERS5Q8N5B7 392 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 TTLL11Q8NHH1 800 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 SH3TC2Q8TF17 1288 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 ZNF333Q96JL9 665 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 COA1Q9GZY4 146 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 IL16Q14005 1332 aa12.81□□□□□ -0.36
SCFD1-220ENST00000556486 RANBP2P49792 3224 aaKnown RBP12.8□□□□□ -0.36
SCFD1-220ENST00000556486 PPP1R12BO60237 982 aaPredicted RBP12.8□□□□□ -0.36
SCFD1-220ENST00000556486 TBC1D12O60347 775 aa12.8□□□□□ -0.36
SCFD1-220ENST00000556486 INHBEP58166 350 aa12.8□□□□□ -0.36
SCFD1-220ENST00000556486 TSPYL6Q8N831 410 aa12.8□□□□□ -0.36
SCFD1-220ENST00000556486 REPIN1Q9BWE0 567 aaKnown RBP12.8□□□□□ -0.36
SCFD1-220ENST00000556486 ARHGAP39Q9C0H5 1083 aa12.8□□□□□ -0.36
SCFD1-220ENST00000556486 BSDC1Q9NW68 430 aaPredicted RBP12.8□□□□□ -0.36
SCFD1-220ENST00000556486 MAP3K2Q9Y2U5 619 aa12.8□□□□□ -0.36
SCFD1-220ENST00000556486 PI4KAP2A4QPH2 592 aa12.79□□□□□ -0.36
SCFD1-220ENST00000556486 CWF19L2Q2TBE0 894 aaKnown RBP12.79□□□□□ -0.36
SCFD1-220ENST00000556486 CDAN1Q8IWY9 1227 aa12.79□□□□□ -0.36
SCFD1-220ENST00000556486 WWC1Q8IX03 1113 aa12.79□□□□□ -0.36
SCFD1-220ENST00000556486 PI4KAP1Q8N8J0 262 aa12.79□□□□□ -0.36
SCFD1-220ENST00000556486 OPTNQ96CV9 577 aa12.79□□□□□ -0.36
SCFD1-220ENST00000556486 ZNF804BA4D1E1 1349 aa12.79□□□□□ -0.36
SCFD1-220ENST00000556486 COL1A1P02452 1464 aaPredicted RBP12.78□□□□□ -0.36
SCFD1-220ENST00000556486 NEURL1BA8MQ27 555 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 DLL1O00548 723 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 USP2O75604 605 aaPredicted RBP12.78□□□□□ -0.36
SCFD1-220ENST00000556486 KCNJ4P48050 445 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 IREB2P48200 963 aaKnown RBP12.78□□□□□ -0.36
SCFD1-220ENST00000556486 RBM5P52756 815 aaKnown RBP eCLIP12.78□□□□□ -0.36
SCFD1-220ENST00000556486 MAP3K11Q16584 847 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 CFAP100Q494V2 611 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 SH3D19Q5HYK7 790 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 OTUD7BQ6GQQ9 843 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 CCDC82Q8N4S0 544 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 HELBQ8NG08 1087 aaPredicted RBP12.78□□□□□ -0.36
SCFD1-220ENST00000556486 PLA2G12BQ9BX93 195 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 STK31Q9BXU1 1019 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 RBM27Q9P2N5 1060 aaKnown RBP12.78□□□□□ -0.36
SCFD1-220ENST00000556486 COL6A3P12111 3177 aa12.78□□□□□ -0.36
SCFD1-220ENST00000556486 A0A1B0GUL6 1792 aa12.77□□□□□ -0.36
SCFD1-220ENST00000556486 H7C1W4 665 aa12.77□□□□□ -0.37
SCFD1-220ENST00000556486 TAF5LO75529 589 aa12.77□□□□□ -0.37
SCFD1-220ENST00000556486 PDIA4P13667 645 aaKnown RBP12.77□□□□□ -0.37
SCFD1-220ENST00000556486 MMP14P50281 582 aa12.77□□□□□ -0.37
SCFD1-220ENST00000556486 NEXNQ0ZGT2 675 aa12.77□□□□□ -0.37
SCFD1-220ENST00000556486 TAF1CQ15572 869 aaPredicted RBP12.77□□□□□ -0.37
SCFD1-220ENST00000556486 UBE3BQ7Z3V4 1068 aa12.77□□□□□ -0.37
SCFD1-220ENST00000556486 BRI3BPQ8WY22 251 aa12.77□□□□□ -0.37
SCFD1-220ENST00000556486 TSR2Q969E8 191 aaKnown RBP12.77□□□□□ -0.37
SCFD1-220ENST00000556486 PRMT6Q96LA8 375 aaPredicted RBP12.77□□□□□ -0.37
SCFD1-220ENST00000556486 CCL15-CCL14A0A0B4J2E2 113 aa12.76□□□□□ -0.37
SCFD1-220ENST00000556486 IGHMBP2P38935 993 aaKnown RBP12.76□□□□□ -0.37
SCFD1-220ENST00000556486 RASA3Q14644 834 aa12.76□□□□□ -0.37
SCFD1-220ENST00000556486 CCL15Q16663 113 aa12.76□□□□□ -0.37
SCFD1-220ENST00000556486 TWISTNBQ3B726 338 aaPredicted RBP12.76□□□□□ -0.37
SCFD1-220ENST00000556486 NBPF11Q86T75 865 aa12.76□□□□□ -0.37
SCFD1-220ENST00000556486 FAM43AQ8N2R8 423 aa12.76□□□□□ -0.37
SCFD1-220ENST00000556486 DPF3Q92784 378 aa12.76□□□□□ -0.37
SCFD1-220ENST00000556486 CD209Q9NNX6 404 aa12.76□□□□□ -0.37
SCFD1-220ENST00000556486 LEMD3Q9Y2U8 911 aa12.76□□□□□ -0.37
SCFD1-220ENST00000556486 A0A0C4DFX4 3053 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 EVI5O60447 810 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 CACNA1FO60840 1977 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 ITGA6P23229 1130 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 CASP7P55210 303 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 CHRNDQ07001 517 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 MCM6Q14566 821 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 SUPT20HL1Q3ZLR7 823 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 CCDC184Q52MB2 194 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 ANKRD13AQ8IZ07 590 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 SLC17A8Q8NDX2 589 aa12.75□□□□□ -0.37
SCFD1-220ENST00000556486 MYO1BO43795 1136 aa12.74□□□□□ -0.37
SCFD1-220ENST00000556486 CSF1RP07333 972 aa12.74□□□□□ -0.37
SCFD1-220ENST00000556486 GCKRQ14397 625 aa12.74□□□□□ -0.37
SCFD1-220ENST00000556486 MTFR1Q15390 333 aa12.74□□□□□ -0.37
SCFD1-220ENST00000556486 G2E3Q7L622 706 aa12.74□□□□□ -0.37
SCFD1-220ENST00000556486 SHISA4Q96DD7 197 aa12.74□□□□□ -0.37
SCFD1-220ENST00000556486 MPHOSPH8Q99549 860 aa12.74□□□□□ -0.37
SCFD1-220ENST00000556486 TCP10L2B9ZVM9 353 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.73□□□□□ -0.37
SCFD1-220ENST00000556486 WDR63Q8IWG1 891 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 LINS1Q8NG48 757 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 MARVELD3Q96A59 401 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 TMUB1Q9BVT8 246 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 TMEM39BQ9GZU3 492 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 ANKRD2Q9GZV1 360 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 TDRD3Q9H7E2 651 aaKnown RBP12.73□□□□□ -0.37
SCFD1-220ENST00000556486 ZFYVE28Q9HCC9 887 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 PPP2R3BQ9Y5P8 575 aa12.73□□□□□ -0.37
SCFD1-220ENST00000556486 FANCIQ9NVI1 1328 aa12.72□□□□□ -0.37
SCFD1-220ENST00000556486 PLIN1O60240 522 aa12.72□□□□□ -0.37
SCFD1-220ENST00000556486 HOXB1P14653 301 aaPredicted RBP12.72□□□□□ -0.37
SCFD1-220ENST00000556486 CLCN1P35523 988 aa12.72□□□□□ -0.37
SCFD1-220ENST00000556486 VGLL4Q14135 290 aa12.72□□□□□ -0.37
SCFD1-220ENST00000556486 ZNF710Q8N1W2 664 aa12.72□□□□□ -0.37
SCFD1-220ENST00000556486 MTMR14Q8NCE2 650 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms