RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 VPS18Q9P253 973 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 RRP15Q9Y3B9 282 aaKnown RBP5.59□□□□□ -1.51
LIMA1-214ENST00000552783 SOWAHDA6NJG2 315 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 GRIN1Q05586 938 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 GRAMD1CQ8IYS0 662 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 FBXO18Q8NFZ0 1043 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 TEX13AQ9BXU3 409 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-214ENST00000552783 ARFGAP3Q9NP61 516 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 LZTFL1Q9NQ48 299 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 BABAM1Q9NWV8 329 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 RGPD2P0DJD1 1756 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 UTYO14607 1347 aa5.59□□□□□ -1.51
LIMA1-214ENST00000552783 MARF1Q9Y4F3 1742 aaKnown RBP5.59□□□□□ -1.52
LIMA1-214ENST00000552783 KDM3BQ7LBC6 1761 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 NCAPD2Q15021 1401 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 NEURL1BA8MQ27 555 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 M0R2C6 588 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 MAP2K7O14733 419 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 RNMTO43148 476 aaKnown RBP5.59□□□□□ -1.52
LIMA1-214ENST00000552783 CASQ1P31415 396 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 FAM193AP78312 1265 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 AMOTQ4VCS5 1084 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 CREBRFQ8IUR6 639 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 GPR161Q8N6U8 529 aaKnown RBP5.59□□□□□ -1.52
LIMA1-214ENST00000552783 SENP2Q9HC62 589 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 TOMM22Q9NS69 142 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 FAN1Q9Y2M0 1017 aa5.59□□□□□ -1.52
LIMA1-214ENST00000552783 MED1Q15648 1581 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-214ENST00000552783 COBLO75128 1261 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 APPP05067 770 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 TOP1P11387 765 aaKnown RBP5.58□□□□□ -1.52
LIMA1-214ENST00000552783 TNNT3P45378 269 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-214ENST00000552783 GCKRQ14397 625 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 BEND6Q5SZJ8 279 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-214ENST00000552783 C8orf76Q96K31 380 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 HAUS7Q99871 368 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 BAG1Q99933 345 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-214ENST00000552783 AKAP2Q9Y2D5 859 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 PCDHA5Q9Y5H7 936 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 PRR29P0C7W0 189 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 ANTXR2P58335 489 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 TBX2Q13207 712 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-214ENST00000552783 ANO1Q5XXA6 986 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 ANKRD13DQ6ZTN6 518 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 TOM1L2Q6ZVM7 507 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 CCDC12Q8WUD4 166 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-214ENST00000552783 ABCB6Q9NP58 842 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 SAMSN1Q9NSI8 373 aaKnown RBP5.58□□□□□ -1.52
LIMA1-214ENST00000552783 POLR3EQ9NVU0 708 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 TUBE1Q9UJT0 475 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 MAST3O60307 1309 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 PLEKHG1Q9ULL1 1385 aa5.58□□□□□ -1.52
LIMA1-214ENST00000552783 IKBKBO14920 756 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 TEX33O43247 280 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 HOXB7P09629 217 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 RHOXF2BP0C7M4 288 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 CMA1P23946 247 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 ACTN2P35609 894 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 SYKP43405 635 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 EVA1CP58658 441 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 MYL5Q02045 173 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 KIF23Q02241 960 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 RAD9BQ6WBX8 426 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 PAXIP1Q6ZW49 1069 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 KBTBD3Q8NAB2 608 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 OSBP2Q969R2 916 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 RHOXF2Q9BQY4 288 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 ARHGAP6O43182 974 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 TXLNAP40222 546 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 VSNL1P62760 191 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 LMBR1LQ6UX01 489 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 GOLGA5Q8TBA6 731 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 KCNG4Q8TDN1 519 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 CPLX3Q8WVH0 158 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 RABGGTAQ92696 567 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 PHKBQ93100 1093 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 ZNF496Q96IT1 587 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 HINFPQ9BQA5 517 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 INCENPQ9NQS7 918 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 PRDM11Q9NQV5 511 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 HPSEQ9Y251 543 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 KLF18A0A0U1RQI7 1052 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 LRRIQ3A6PVS8 624 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 CASP1P29466 404 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 PTPAQ15257 358 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 ZNF790Q6PG37 636 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 PI16Q6UXB8 463 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 NOA1Q8NC60 698 aaKnown RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 RGS22Q8NE09 1264 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 RIN2Q8WYP3 895 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 EXOC4Q96A65 974 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 ZNF274Q96GC6 653 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 ZNF594Q96JF6 807 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 GDAP1L1Q96MZ0 367 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 MPHOSPH8Q99549 860 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 SRRTQ9BXP5 876 aaKnown RBP5.57□□□□□ -1.52
LIMA1-214ENST00000552783 PLEKHG2Q9H7P9 1386 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 HEG1Q9ULI3 1381 aa5.57□□□□□ -1.52
LIMA1-214ENST00000552783 GOLGA8BA8MQT2 603 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms