RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 MECOMQ03112 1051 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 USP48Q86UV5 1035 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 NECAB1Q8N987 351 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 NCOA7Q8NI08 942 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 WDR66Q8TBY9 1149 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 TRIM44Q96DX7 344 aaPredicted RBP16.88■□□□□ 0.29
VPS33A-209ENST00000544349 RIOK1Q9BRS2 568 aaKnown RBP16.88■□□□□ 0.29
VPS33A-209ENST00000544349 NBPF3Q9H094 633 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 NAPBQ9H115 298 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 CNPY2Q9Y2B0 182 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 SALL1Q9NSC2 1324 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 PRDX5P30044 214 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 BRF1Q92994 677 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 CD209Q9NNX6 404 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 SMC3Q9UQE7 1217 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 JAG2Q9Y219 1238 aa16.88■□□□□ 0.29
VPS33A-209ENST00000544349 STX6O43752 255 aa16.87■□□□□ 0.29
VPS33A-209ENST00000544349 FGD1P98174 961 aa16.87■□□□□ 0.29
VPS33A-209ENST00000544349 SPTY2D1Q68D10 685 aaPredicted RBP16.87■□□□□ 0.29
VPS33A-209ENST00000544349 TMED8Q6PL24 325 aaPredicted RBP16.87■□□□□ 0.29
VPS33A-209ENST00000544349 MB21D2Q8IYB1 491 aaPredicted RBP16.87■□□□□ 0.29
VPS33A-209ENST00000544349 FBXL16Q8N461 479 aa16.87■□□□□ 0.29
VPS33A-209ENST00000544349 NACAP1Q9BZK3 213 aa16.87■□□□□ 0.29
VPS33A-209ENST00000544349 MAST2Q6P0Q8 1798 aa16.87■□□□□ 0.29
VPS33A-209ENST00000544349 IGSF3O75054 1194 aa16.87■□□□□ 0.29
VPS33A-209ENST00000544349 GJB2P29033 226 aa16.87■□□□□ 0.29
VPS33A-209ENST00000544349 C6orf229H3BNL8 230 aa16.86■□□□□ 0.29
VPS33A-209ENST00000544349 F13A1P00488 732 aa16.86■□□□□ 0.29
VPS33A-209ENST00000544349 IL1R1P14778 569 aa16.86■□□□□ 0.29
VPS33A-209ENST00000544349 CHST3Q7LGC8 479 aa16.86■□□□□ 0.29
VPS33A-209ENST00000544349 RALYLQ86SE5 291 aaKnown RBP16.86■□□□□ 0.29
VPS33A-209ENST00000544349 TBC1D10CQ8IV04 446 aa16.86■□□□□ 0.29
VPS33A-209ENST00000544349 MCM5P33992 734 aa16.85■□□□□ 0.29
VPS33A-209ENST00000544349 DYNLL1P63167 89 aaKnown RBP16.85■□□□□ 0.29
VPS33A-209ENST00000544349 C2CD5Q86YS7 1000 aa16.85■□□□□ 0.29
VPS33A-209ENST00000544349 TMEM87AQ8NBN3 555 aa16.85■□□□□ 0.29
VPS33A-209ENST00000544349 TDO2P48775 406 aa16.85■□□□□ 0.29
VPS33A-209ENST00000544349 TRDNQ13061 729 aa16.85■□□□□ 0.29
VPS33A-209ENST00000544349 STK3Q13188 491 aa16.85■□□□□ 0.29
VPS33A-209ENST00000544349 ZNF622Q969S3 477 aaKnown RBP eCLIP16.85■□□□□ 0.29
VPS33A-209ENST00000544349 H0YIN7 160 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 MPNDQ8N594 471 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 SDR42E1Q8WUS8 393 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 GTF3C6Q969F1 213 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 MTMR6Q9Y217 621 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 CHD4Q14839 1912 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 WDR19Q8NEZ3 1342 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 KIAA1551Q9HCM1 1747 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 PRC1O43663 620 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 LDHBP07195 334 aaKnown RBP16.84■□□□□ 0.29
VPS33A-209ENST00000544349 ANTXR2P58335 489 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 APOBRQ0VD83 1088 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 TPRNQ4KMQ1 711 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 STYK1Q6J9G0 422 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 OLFM4Q6UX06 510 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 DZIP1Q86YF9 867 aaKnown RBP16.84■□□□□ 0.29
VPS33A-209ENST00000544349 RNF214Q8ND24 703 aa16.84■□□□□ 0.29
VPS33A-209ENST00000544349 PDGFDQ9GZP0 370 aaPredicted RBP16.84■□□□□ 0.29
VPS33A-209ENST00000544349 CTDSPL2Q05D32 466 aa16.83■□□□□ 0.28
VPS33A-209ENST00000544349 PDLIM2Q96JY6 352 aa16.83■□□□□ 0.28
VPS33A-209ENST00000544349 TIAM2Q8IVF5 1701 aa16.83■□□□□ 0.28
VPS33A-209ENST00000544349 DUOX1Q9NRD9 1551 aa16.83■□□□□ 0.28
VPS33A-209ENST00000544349 FIBPO43427 364 aa16.82■□□□□ 0.28
VPS33A-209ENST00000544349 PFKFB2O60825 505 aa16.82■□□□□ 0.28
VPS33A-209ENST00000544349 EVCP57679 992 aa16.82■□□□□ 0.28
VPS33A-209ENST00000544349 ANP32BQ92688 251 aaKnown RBP16.82■□□□□ 0.28
VPS33A-209ENST00000544349 TMX4Q9H1E5 349 aaPredicted RBP16.82■□□□□ 0.28
VPS33A-209ENST00000544349 AATFQ9NY61 560 aaKnown RBP eCLIP16.82■□□□□ 0.28
VPS33A-209ENST00000544349 NEDD4P46934 1319 aa16.82■□□□□ 0.28
VPS33A-209ENST00000544349 GRIK5Q16478 980 aa16.82■□□□□ 0.28
VPS33A-209ENST00000544349 DPP8Q6V1X1 898 aaPredicted RBP16.82■□□□□ 0.28
VPS33A-209ENST00000544349 NKX2-3Q8TAU0 364 aa16.82■□□□□ 0.28
VPS33A-209ENST00000544349 ZNF274Q96GC6 653 aaPredicted RBP16.82■□□□□ 0.28
VPS33A-209ENST00000544349 SCRN1Q12765 414 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 AKNAD1Q5T1N1 836 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 CYB5R4Q7L1T6 521 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 STAG1Q8WVM7 1258 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 TACC3Q9Y6A5 838 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 B4E1Z4 1266 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 RIMBP2O15034 1052 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 CHRNA5P30532 468 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 PPARAQ07869 468 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 GIMAP6Q6P9H5 292 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 ZC3H12CQ9C0D7 883 aaKnown RBP16.81■□□□□ 0.28
VPS33A-209ENST00000544349 COA1Q9GZY4 146 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 INCENPQ9NQS7 918 aa16.81■□□□□ 0.28
VPS33A-209ENST00000544349 GPHNQ9NQX3 736 aaPredicted RBP16.81■□□□□ 0.28
VPS33A-209ENST00000544349 SLX4Q8IY92 1834 aa16.8■□□□□ 0.28
VPS33A-209ENST00000544349 VPS37CA5D8V6 355 aaPredicted RBP16.8■□□□□ 0.28
VPS33A-209ENST00000544349 PDIA3P30101 505 aaKnown RBP16.8■□□□□ 0.28
VPS33A-209ENST00000544349 GSTO1P78417 241 aa16.8■□□□□ 0.28
VPS33A-209ENST00000544349 DNM1Q05193 864 aaKnown RBP16.8■□□□□ 0.28
VPS33A-209ENST00000544349 MFSD6Q6ZSS7 791 aa16.8■□□□□ 0.28
VPS33A-209ENST00000544349 CRNKL1Q9BZJ0 848 aaKnown RBP16.8■□□□□ 0.28
VPS33A-209ENST00000544349 TSPY26PQ9H489 355 aa16.8■□□□□ 0.28
VPS33A-209ENST00000544349 CNNM2Q9H8M5 875 aa16.8■□□□□ 0.28
VPS33A-209ENST00000544349 ANAPC4Q9UJX5 808 aa16.8■□□□□ 0.28
VPS33A-209ENST00000544349 BAZ2AQ9UIF9 1905 aaKnown RBP16.8■□□□□ 0.28
VPS33A-209ENST00000544349 FAM205AQ6ZU69 1335 aa16.8■□□□□ 0.28
VPS33A-209ENST00000544349 SLC16A10Q8TF71 515 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms