RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 MARCH10Q8NA82 808 aaPredicted RBP11.73□□□□□ -0.53
MCF2-209ENST00000520602 DENND2AQ9ULE3 1009 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 KCNJ14Q9UNX9 436 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 COL5A2P05997 1499 aaPredicted RBP11.73□□□□□ -0.53
MCF2-209ENST00000520602 PTGS1P23219 599 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 PDE4BQ07343 736 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 CFAP100Q494V2 611 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 SPECC1Q5M775 1068 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 VIRMAQ69YN4 1812 aaKnown RBP11.73□□□□□ -0.53
MCF2-209ENST00000520602 CDHR2Q9BYE9 1310 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 RESTQ13127 1097 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.73□□□□□ -0.53
MCF2-209ENST00000520602 TRIM34Q9BYJ4 488 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 ZNF219Q9P2Y4 722 aaPredicted RBP11.73□□□□□ -0.53
MCF2-209ENST00000520602 NOLC1Q14978 699 aaKnown RBP eCLIP11.72□□□□□ -0.53
MCF2-209ENST00000520602 MYSM1Q5VVJ2 828 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 AEBP2Q6ZN18 517 aaPredicted RBP11.72□□□□□ -0.53
MCF2-209ENST00000520602 LCORLQ8N3X6 602 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 TMEM87AQ8NBN3 555 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 FBXO18Q8NFZ0 1043 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 RGPD1P0DJD0 1748 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 C16orf45Q96MC5 204 aaPredicted RBP11.72□□□□□ -0.53
MCF2-209ENST00000520602 CLIC4Q9Y696 253 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 CAMTA1Q9Y6Y1 1673 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 CARMIL3Q8ND23 1372 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 F8W031 263 aaPredicted RBP11.72□□□□□ -0.53
MCF2-209ENST00000520602 EIF5P55010 431 aaKnown RBP11.72□□□□□ -0.53
MCF2-209ENST00000520602 STRBPQ96SI9 672 aaKnown RBP11.72□□□□□ -0.53
MCF2-209ENST00000520602 TRMT1Q9NXH9 659 aaKnown RBP11.72□□□□□ -0.53
MCF2-209ENST00000520602 CEP131Q9UPN4 1083 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 SLIT3O75094 1523 aa11.72□□□□□ -0.53
MCF2-209ENST00000520602 SMTNL1A8MU46 457 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 APOA5Q6Q788 366 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 TBC1D10CQ8IV04 446 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 VAT1LQ9HCJ6 419 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 ZSWIM5Q9P217 1185 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 USP17L12C9JPN9 530 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 USP17L21D6R901 530 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 BAG3O95817 575 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 LMOD1P29536 600 aaPredicted RBP11.71□□□□□ -0.53
MCF2-209ENST00000520602 PPARAQ07869 468 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 SPTY2D1Q68D10 685 aaPredicted RBP11.71□□□□□ -0.53
MCF2-209ENST00000520602 ATL3Q6DD88 541 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 DIS3L2Q8IYB7 885 aaKnown RBP11.71□□□□□ -0.53
MCF2-209ENST00000520602 CNBD1Q8NA66 436 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 KCNB2Q92953 911 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 PLA2G12BQ9BX93 195 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 KAT14Q9H8E8 782 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 PCDHA7Q9UN72 937 aa11.71□□□□□ -0.53
MCF2-209ENST00000520602 CAVIN2O95810 425 aa11.71□□□□□ -0.54
MCF2-209ENST00000520602 RBM5P52756 815 aaKnown RBP eCLIP11.71□□□□□ -0.54
MCF2-209ENST00000520602 ITPK1Q13572 414 aa11.71□□□□□ -0.54
MCF2-209ENST00000520602 SLC4A9Q96Q91 983 aa11.71□□□□□ -0.54
MCF2-209ENST00000520602 ANKRD2Q9GZV1 360 aa11.71□□□□□ -0.54
MCF2-209ENST00000520602 CABP5Q9NP86 173 aa11.71□□□□□ -0.54
MCF2-209ENST00000520602 V9GY48 417 aaPredicted RBP11.71□□□□□ -0.54
MCF2-209ENST00000520602 DYNLL1P63167 89 aaKnown RBP11.7□□□□□ -0.54
MCF2-209ENST00000520602 ST3GAL1Q11201 340 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 ELP1O95163 1332 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 LDHBP07195 334 aaKnown RBP11.7□□□□□ -0.54
MCF2-209ENST00000520602 EXOSC10Q01780 885 aaKnown RBP11.7□□□□□ -0.54
MCF2-209ENST00000520602 ZNF34Q8IZ26 560 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 PGBD1Q96JS3 809 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 UBN2Q6ZU65 1347 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 CYP2D7A0A087X1C5 515 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 OFD1O75665 1012 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 TXLNAP40222 546 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 FAM47AQ5JRC9 791 aa11.7□□□□□ -0.54
MCF2-209ENST00000520602 THRAP3Q9Y2W1 955 aaKnown RBP11.7□□□□□ -0.54
MCF2-209ENST00000520602 ZNF202O95125 648 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 CYB5R4Q7L1T6 521 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 TMC6Q7Z403 805 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 FAM177A1Q8N128 213 aaPredicted RBP11.69□□□□□ -0.54
MCF2-209ENST00000520602 LDHCP07864 332 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 AFMP43652 599 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 ZSCAN29Q8IWY8 852 aaPredicted RBP11.69□□□□□ -0.54
MCF2-209ENST00000520602 CCAR2Q8N163 923 aaKnown RBP11.69□□□□□ -0.54
MCF2-209ENST00000520602 MRVI1Q9Y6F6 885 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 RFX7Q2KHR2 1363 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 BTBD18B2RXH4 712 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 ZNF654Q8IZM8 581 aa11.69□□□□□ -0.54
MCF2-209ENST00000520602 ALDH8A1Q9H2A2 487 aaPredicted RBP11.69□□□□□ -0.54
MCF2-209ENST00000520602 SAP30BPQ9UHR5 308 aaKnown RBP11.69□□□□□ -0.54
MCF2-209ENST00000520602 MED1Q15648 1581 aaPredicted RBP11.69□□□□□ -0.54
MCF2-209ENST00000520602 RIMBP2O15034 1052 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 TPM1P09493 284 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 TSPY3P0CV98 308 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 TSPY8P0CW00 308 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 SFPQP23246 707 aaKnown RBP eCLIP11.68□□□□□ -0.54
MCF2-209ENST00000520602 ST5P78524 1137 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 IKQ13123 557 aaPredicted RBP11.68□□□□□ -0.54
MCF2-209ENST00000520602 SOGA3Q5TF21 947 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 ADALQ6DHV7 355 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 ANKRD20A12PQ8NF67 263 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 CELF1Q92879 486 aaKnown RBP11.68□□□□□ -0.54
MCF2-209ENST00000520602 RCOR1Q9UKL0 485 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 ZMYM6O95789 1325 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 NDUFA8P51970 172 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 UBE4AQ14139 1066 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 MB21D2Q8IYB1 491 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms