RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 SYT1P21579 422 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 HOXA10P31260 410 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 RFC4P35249 363 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 RCAN1P53805 252 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 GRAPQ13588 217 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 NFIXQ14938 502 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 SLC9C2Q5TAH2 1124 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 GIMAP6Q6P9H5 292 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 POTEEQ6S8J3 1075 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 AMIGO3Q86WK7 504 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 NBPF5PQ86XG9 351 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 MB21D2Q8IYB1 491 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 GRAPLQ8TC17 118 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 PTCD2Q8WV60 388 aaKnown RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 CELF1Q92879 486 aaKnown RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 GNL3LQ9NVN8 582 aaKnown RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 SRP68Q9UHB9 627 aaKnown RBP9.07□□□□□ -0.96
SYNE1-231ENST00000498751 LRRC37AA6NMS7 1700 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 MAST2Q6P0Q8 1798 aa9.07□□□□□ -0.96
SYNE1-231ENST00000498751 ZNF532Q9HCE3 1301 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 CACNA1SQ13698 1873 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.06□□□□□ -0.96
SYNE1-231ENST00000498751 GTPBP6O43824 516 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-231ENST00000498751 MBD3O95983 291 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 PCP11498 1178 aaKnown RBP9.06□□□□□ -0.96
SYNE1-231ENST00000498751 ZNF445P59923 1031 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 HMGN5P82970 282 aaKnown RBP9.06□□□□□ -0.96
SYNE1-231ENST00000498751 COL9A3Q14050 684 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-231ENST00000498751 CAVIN4Q5BKX8 364 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 PI16Q6UXB8 463 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 FLAD1Q8NFF5 587 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 NCOA7Q8NI08 942 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 FAM84BQ96KN1 310 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-231ENST00000498751 RYDENQ9NUL5 291 aaKnown RBP9.06□□□□□ -0.96
SYNE1-231ENST00000498751 ANAPC4Q9UJX5 808 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 MTMR6Q9Y217 621 aa9.06□□□□□ -0.96
SYNE1-231ENST00000498751 COL1A1P02452 1464 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-231ENST00000498751 ZNF213O14771 459 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 F13A1P00488 732 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 FGRP09769 529 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 CPA1P15085 419 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 GJB2P29033 226 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 GTF2E1P29083 439 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-231ENST00000498751 MCM5P33992 734 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 WASHC4Q2M389 1173 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 PRR5LQ6MZQ0 368 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 Q6ZUG5 572 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 SGMS1Q86VZ5 419 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 CCDC83Q8IWF9 413 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 HELBQ8NG08 1087 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-231ENST00000498751 TMEM87BQ96K49 555 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 CRAMP1Q96RY5 1269 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 CRISPLD2Q9H0B8 497 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 PODXL2Q9NZ53 605 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 KIF3AQ9Y496 699 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 LTBP1Q14766 1721 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 ELP1O95163 1332 aa9.05□□□□□ -0.96
SYNE1-231ENST00000498751 GSG1L2A8MUP6 293 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 IDH1O75874 414 aaKnown RBP9.04□□□□□ -0.96
SYNE1-231ENST00000498751 LIFRP42702 1097 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 BCAMP50895 628 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 KCNQ4P56696 695 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 LSM11P83369 360 aaKnown RBP eCLIP9.04□□□□□ -0.96
SYNE1-231ENST00000498751 TXNRD1Q16881 649 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 CSPP1Q1MSJ5 1256 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 SLFNL1Q499Z3 407 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 L1TD1Q5T7N2 865 aaKnown RBP9.04□□□□□ -0.96
SYNE1-231ENST00000498751 ATL3Q6DD88 541 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 NAA16Q6N069 864 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-231ENST00000498751 CERS3Q8IU89 383 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 CNBD1Q8NA66 436 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 AIDAQ96BJ3 306 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 RIOK1Q9BRS2 568 aaKnown RBP9.04□□□□□ -0.96
SYNE1-231ENST00000498751 BRIP1Q9BX63 1249 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 CNNM2Q9H8M5 875 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 WWC3Q9ULE0 1092 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 QSER1Q2KHR3 1735 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 XDHP47989 1333 aa9.04□□□□□ -0.96
SYNE1-231ENST00000498751 TNS1Q9HBL0 1735 aaKnown RBP9.03□□□□□ -0.96
SYNE1-231ENST00000498751 BBOX1O75936 387 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 PDIA3P30101 505 aaKnown RBP9.03□□□□□ -0.96
SYNE1-231ENST00000498751 SCRN1Q12765 414 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 FAM182BQ5T319 152 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 MCTP1Q6DN14 999 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 IFNL3Q8IZI9 196 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 NLGN1Q8N2Q7 840 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 NSUN7Q8NE18 718 aaKnown RBP9.03□□□□□ -0.96
SYNE1-231ENST00000498751 TDRD7Q8NHU6 1098 aaKnown RBP9.03□□□□□ -0.96
SYNE1-231ENST00000498751 STAG1Q8WVM7 1258 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 BRF1Q92994 677 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 RNF166Q96A37 237 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-231ENST00000498751 NBPF3Q9H094 633 aa9.03□□□□□ -0.96
SYNE1-231ENST00000498751 ZSCAN16Q9H4T2 348 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-231ENST00000498751 EPB41L4AQ9HCS5 686 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-231ENST00000498751 MYO5AQ9Y4I1 1855 aaKnown RBP9.02□□□□□ -0.96
SYNE1-231ENST00000498751 FAM177BA6PVY3 158 aa9.02□□□□□ -0.97
SYNE1-231ENST00000498751 SNAP23O00161 211 aa9.02□□□□□ -0.97
SYNE1-231ENST00000498751 POLRMTO00411 1230 aaKnown RBP9.02□□□□□ -0.97
SYNE1-231ENST00000498751 DHX16O60231 1041 aaKnown RBP9.02□□□□□ -0.97
SYNE1-231ENST00000498751 SERPINB2P05120 415 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms