RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 TSC1Q92574 1164 aa16.1■□□□□ 0.17
VCP-207ENST00000493886 CELF1Q92879 486 aaKnown RBP16.1■□□□□ 0.17
VCP-207ENST00000493886 NAPBQ9H115 298 aa16.1■□□□□ 0.17
VCP-207ENST00000493886 A0A1B0GUL6 1792 aa16.1■□□□□ 0.17
VCP-207ENST00000493886 DHX16O60231 1041 aaKnown RBP16.09■□□□□ 0.17
VCP-207ENST00000493886 GYG1P46976 350 aa16.09■□□□□ 0.17
VCP-207ENST00000493886 CYB5R4Q7L1T6 521 aa16.09■□□□□ 0.17
VCP-207ENST00000493886 NBPF5PQ86XG9 351 aaPredicted RBP16.09■□□□□ 0.17
VCP-207ENST00000493886 RGS22Q8NE09 1264 aa16.09■□□□□ 0.17
VCP-207ENST00000493886 NKX2-3Q8TAU0 364 aa16.09■□□□□ 0.17
VCP-207ENST00000493886 GOLGA6L4A6NEF3 574 aa16.09■□□□□ 0.17
VCP-207ENST00000493886 WTIPA6NIX2 430 aaPredicted RBP16.09■□□□□ 0.17
VCP-207ENST00000493886 B4E1Z4 1266 aa16.09■□□□□ 0.17
VCP-207ENST00000493886 GJD4Q96KN9 370 aaPredicted RBP16.09■□□□□ 0.17
VCP-207ENST00000493886 GNL3LQ9NVN8 582 aaKnown RBP16.09■□□□□ 0.17
VCP-207ENST00000493886 ANGEL1Q9UNK9 670 aaKnown RBP16.09■□□□□ 0.17
VCP-207ENST00000493886 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.08■□□□□ 0.17
VCP-207ENST00000493886 GSG1L2A8MUP6 293 aa16.08■□□□□ 0.17
VCP-207ENST00000493886 AP5Z1O43299 807 aa16.08■□□□□ 0.17
VCP-207ENST00000493886 RAB11FIP4Q86YS3 637 aa16.08■□□□□ 0.17
VCP-207ENST00000493886 LCORLQ8N3X6 602 aa16.08■□□□□ 0.17
VCP-207ENST00000493886 NLRP3Q96P20 1036 aa16.08■□□□□ 0.17
VCP-207ENST00000493886 CFAP45Q9UL16 551 aa16.08■□□□□ 0.17
VCP-207ENST00000493886 NEDD4P46934 1319 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 PNPLA7Q6ZV29 1317 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 LIG1P18858 919 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 GNAT2P19087 354 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 PPP4R3BQ5MIZ7 849 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 AMIGO3Q86WK7 504 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 COL24A1Q17RW2 1714 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 SH2B2O14492 632 aaPredicted RBP16.08■□□□□ 0.16
VCP-207ENST00000493886 GUCY1B3Q02153 619 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 MEX3CQ5U5Q3 659 aaKnown RBP16.08■□□□□ 0.16
VCP-207ENST00000493886 CKAP2LQ8IYA6 745 aa16.08■□□□□ 0.16
VCP-207ENST00000493886 ARHGEF1Q92888 912 aaKnown RBP16.08■□□□□ 0.16
VCP-207ENST00000493886 PRKAB2O43741 272 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 ADD1P35611 737 aaKnown RBP16.07■□□□□ 0.16
VCP-207ENST00000493886 CAVIN4Q5BKX8 364 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 TMED8Q6PL24 325 aaPredicted RBP16.07■□□□□ 0.16
VCP-207ENST00000493886 SLC4A4Q9Y6R1 1079 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 CPLX1O14810 134 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 RPS8P62241 208 aaKnown RBP16.07■□□□□ 0.16
VCP-207ENST00000493886 TPTE2Q6XPS3 522 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 MIGA1Q8NAN2 632 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 PGBD1Q96JS3 809 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 FUCA2Q9BTY2 467 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 ABCF2Q9UG63 623 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 MYH15Q9Y2K3 1946 aa16.07■□□□□ 0.16
VCP-207ENST00000493886 CYP7A1P22680 504 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 CTDSPL2Q05D32 466 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 VPS37DQ86XT2 251 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 TMEM87BQ96K49 555 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 NACAP1Q9BZK3 213 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 INCENPQ9NQS7 918 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 ORC3Q9UBD5 711 aaPredicted RBP16.06■□□□□ 0.16
VCP-207ENST00000493886 KDM4AO75164 1064 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 CCDC24Q8N4L8 307 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 TAOK2Q9UL54 1235 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 TAF1LQ8IZX4 1826 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 LY75O60449 1722 aa16.06■□□□□ 0.16
VCP-207ENST00000493886 COL1A1P02452 1464 aaPredicted RBP16.06■□□□□ 0.16
VCP-207ENST00000493886 TDO2P48775 406 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 SASS6Q6UVJ0 657 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 FAM84BQ96KN1 310 aaPredicted RBP16.05■□□□□ 0.16
VCP-207ENST00000493886 NUP62CLQ9H1M0 184 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 RAI14Q9P0K7 980 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 UVSSAQ2YD98 709 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 AKNAD1Q5T1N1 836 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 CERS3Q8IU89 383 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 IGDCC4Q8TDY8 1250 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 DACT1Q9NYF0 836 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 CHD4Q14839 1912 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 CEBPZQ03701 1054 aaKnown RBP16.05■□□□□ 0.16
VCP-207ENST00000493886 ATL3Q6DD88 541 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 ADGRA1Q86SQ6 560 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 BICD2Q8TD16 824 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 C8orf76Q96K31 380 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 ZNF396Q96N95 335 aaPredicted RBP16.05■□□□□ 0.16
VCP-207ENST00000493886 TACC3Q9Y6A5 838 aa16.05■□□□□ 0.16
VCP-207ENST00000493886 AFF2P51816 1311 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 SBF2Q86WG5 1849 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 C4AP0C0L4 1744 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 C4BP0C0L5 1744 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 TIAM2Q8IVF5 1701 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 METAP2P50579 478 aaKnown RBP eCLIP16.04■□□□□ 0.16
VCP-207ENST00000493886 APOA5Q6Q788 366 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 ILDR1Q86SU0 546 aaPredicted RBP16.04■□□□□ 0.16
VCP-207ENST00000493886 CNNM2Q9H8M5 875 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 SENP2Q9HC62 589 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 RCOR1Q9UKL0 485 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 NOLC1Q14978 699 aaKnown RBP eCLIP16.04■□□□□ 0.163e-7■□□□□ 8.6
VCP-207ENST00000493886 TMEM67Q5HYA8 995 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 OTUD7BQ6GQQ9 843 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 MFSD6Q6ZSS7 791 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 SMAP1Q8IYB5 467 aaPredicted RBP16.04■□□□□ 0.16
VCP-207ENST00000493886 USP28Q96RU2 1077 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 FTOQ9C0B1 505 aaKnown RBP eCLIP16.04■□□□□ 0.16
VCP-207ENST00000493886 DDX19AQ9NUU7 478 aaKnown RBP16.04■□□□□ 0.16
VCP-207ENST00000493886 ZSWIM5Q9P217 1185 aa16.04■□□□□ 0.16
VCP-207ENST00000493886 RFC4P35249 363 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms