RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 MYH13Q9UKX3 1938 aa24.69■■□□□ 1.54
CCDC88B-208ENST00000492980 KLRK1P26718 216 aa24.69■■□□□ 1.54
CCDC88B-208ENST00000492980 ATL3Q6DD88 541 aa24.69■■□□□ 1.54
CCDC88B-208ENST00000492980 APOA5Q6Q788 366 aa24.69■■□□□ 1.54
CCDC88B-208ENST00000492980 NUP62CLQ9H1M0 184 aa24.69■■□□□ 1.54
CCDC88B-208ENST00000492980 RCOR1Q9UKL0 485 aa24.69■■□□□ 1.54
CCDC88B-208ENST00000492980 TM4SF1P30408 202 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 METAP2P50579 478 aaKnown RBP eCLIP24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 SEPT12Q8IYM1 358 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 STAG1Q8WVM7 1258 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 C8orf76Q96K31 380 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 KDM4AO75164 1064 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 RFC4P35249 363 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 UVSSAQ2YD98 709 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 TRAPPC3LQ5T215 181 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 SGMS1Q86VZ5 419 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 ZNF396Q96N95 335 aaPredicted RBP24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 USP28Q96RU2 1077 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 KRT23Q9C075 422 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 FTOQ9C0B1 505 aaKnown RBP eCLIP24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 ANKRD2Q9GZV1 360 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 DACT1Q9NYF0 836 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 ZSWIM5Q9P217 1185 aa24.68■■□□□ 1.54
CCDC88B-208ENST00000492980 MAGEB6P1A0A0J9YX57 407 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 SEMA3EO15041 775 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 CEBPZQ03701 1054 aaKnown RBP24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 TMEM67Q5HYA8 995 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 MFSD6Q6ZSS7 791 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 BICD2Q8TD16 824 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 DDX19AQ9NUU7 478 aaKnown RBP24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 HSPA1LP34931 641 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 LIFRP42702 1097 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 OTUD7BQ6GQQ9 843 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 FAM196AQ6ZSG2 479 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 FBXO18Q8NFZ0 1043 aa24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 TRPC5Q9UL62 973 aaPredicted RBP24.67■■□□□ 1.54
CCDC88B-208ENST00000492980 ECM29Q5VYK3 1845 aa24.66■■□□□ 1.54
CCDC88B-208ENST00000492980 RIOK1Q9BRS2 568 aaKnown RBP24.66■■□□□ 1.54
CCDC88B-208ENST00000492980 MAP3K11Q16584 847 aa24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 CERKQ8TCT0 537 aa24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 LRRC4BQ9NT99 713 aa24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 ZBTB43O43298 467 aa24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 RXRAP19793 462 aa24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 NFXL1Q6ZNB6 911 aa24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 MICU3Q86XE3 530 aa24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 BCL11BQ9C0K0 894 aaPredicted RBP24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 CLSTN2Q9H4D0 955 aa24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 PDS5AQ29RF7 1337 aaKnown RBP24.65■■□□□ 1.54
CCDC88B-208ENST00000492980 IFIT3O14879 490 aaKnown RBP24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 NR1I2O75469 434 aa24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 CDC27P30260 824 aa24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 CLCN1P35523 988 aa24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 CAMK4Q16566 473 aa24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 HS1BP3Q53T59 392 aa24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 RGS22Q8NE09 1264 aa24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 ZNF384Q8TF68 577 aa24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 SDR42E1Q8WUS8 393 aa24.64■■□□□ 1.54
CCDC88B-208ENST00000492980 CDKL5O76039 1030 aa24.64■■□□□ 1.53
CCDC88B-208ENST00000492980 PPARAQ07869 468 aa24.64■■□□□ 1.53
CCDC88B-208ENST00000492980 NFIXQ14938 502 aa24.64■■□□□ 1.53
CCDC88B-208ENST00000492980 TNMDQ9H2S6 317 aa24.64■■□□□ 1.53
CCDC88B-208ENST00000492980 UBR3Q6ZT12 1888 aa24.63■■□□□ 1.53
CCDC88B-208ENST00000492980 CCDC192P0DO97 292 aa24.63■■□□□ 1.53
CCDC88B-208ENST00000492980 RBM43Q6ZSC3 357 aaKnown RBP24.63■■□□□ 1.53
CCDC88B-208ENST00000492980 TFCP2L1Q9NZI6 479 aa24.63■■□□□ 1.53
CCDC88B-208ENST00000492980 HIBADHP31937 336 aaKnown RBP24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 RRP12Q5JTH9 1297 aaKnown RBP24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 RNF41Q9H4P4 317 aaPredicted RBP24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 GJB4Q9NTQ9 266 aa24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 FAM217BQ9NTX9 383 aaPredicted RBP24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 NID2Q14112 1375 aa24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 GOLGA8AA7E2F4 631 aa24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 NPHP1O15259 732 aa24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 NTRK3Q16288 839 aa24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 MYL10Q9BUA6 226 aa24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 ANAPC4Q9UJX5 808 aa24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 MAST2Q6P0Q8 1798 aa24.62■■□□□ 1.53
CCDC88B-208ENST00000492980 IRS2Q9Y4H2 1338 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 DYNLL1P63167 89 aaKnown RBP24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 CPLX2Q6PUV4 134 aaKnown RBP24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 CCDC144CPQ8IYA2 1237 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 SLC12A7Q9Y666 1083 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 CCDC69A6NI79 296 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 ADRA2BP18089 450 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 BRAPQ7Z569 592 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 MTA3Q9BTC8 594 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 TOMM22Q9NS69 142 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 RTEL1Q9NZ71 1219 aa24.61■■□□□ 1.53
CCDC88B-208ENST00000492980 ZSCAN30Q86W11 494 aa24.6■■□□□ 1.53
CCDC88B-208ENST00000492980 NSUN4Q96CB9 384 aaKnown RBP24.6■■□□□ 1.53
CCDC88B-208ENST00000492980 ALG1Q9BT22 464 aa24.6■■□□□ 1.53
CCDC88B-208ENST00000492980 BAZ2AQ9UIF9 1905 aaKnown RBP24.6■■□□□ 1.53
CCDC88B-208ENST00000492980 KIF23Q02241 960 aaPredicted RBP24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 STK11IPQ8N1F8 1099 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 CNBD1Q8NA66 436 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 PHKBQ93100 1093 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 AIFM3Q96NN9 605 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 MINDY4BA8MYZ0 360 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 KIF28PB7ZC32 967 aa24.59■■□□□ 1.53
CCDC88B-208ENST00000492980 RANBP6O60518 1105 aaKnown RBP24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms