RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 BTDP43251 543 aa13.42□□□□□ -0.26
UBE4B-210ENST00000488228 TTF1Q15361 905 aaPredicted RBP13.42□□□□□ -0.26
UBE4B-210ENST00000488228 NAA16Q6N069 864 aaPredicted RBP13.42□□□□□ -0.26
UBE4B-210ENST00000488228 PLEKHM2Q8IWE5 1019 aa13.42□□□□□ -0.26
UBE4B-210ENST00000488228 CNTROBQ8N137 903 aa13.42□□□□□ -0.26
UBE4B-210ENST00000488228 MAGEB6Q8N7X4 407 aa13.42□□□□□ -0.26
UBE4B-210ENST00000488228 DCPSQ96C86 337 aaKnown RBP13.42□□□□□ -0.26
UBE4B-210ENST00000488228 ZNF70Q9UC06 446 aaPredicted RBP13.42□□□□□ -0.26
UBE4B-210ENST00000488228 LAMB1P07942 1786 aa13.42□□□□□ -0.26
UBE4B-210ENST00000488228 SSC5DA1L4H1 1573 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 CYP7A1P22680 504 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 GSTO1P78417 241 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 FSTL1Q12841 308 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 MAP3K12Q12852 859 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 SLFNL1Q499Z3 407 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 USP48Q86UV5 1035 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 APOBEC3FQ8IUX4 373 aaKnown RBP13.41□□□□□ -0.26
UBE4B-210ENST00000488228 SULF1Q8IWU6 871 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 MYH8P13535 1937 aa13.41□□□□□ -0.26
UBE4B-210ENST00000488228 PASKQ96RG2 1323 aa13.4□□□□□ -0.26
UBE4B-210ENST00000488228 TCP10L2B9ZVM9 353 aa13.4□□□□□ -0.26
UBE4B-210ENST00000488228 ITGBL1O95965 494 aaPredicted RBP13.4□□□□□ -0.26
UBE4B-210ENST00000488228 CDC42EP5Q6NZY7 148 aa13.4□□□□□ -0.26
UBE4B-210ENST00000488228 SLF2Q8IX21 1173 aa13.4□□□□□ -0.26
UBE4B-210ENST00000488228 MIGA1Q8NAN2 632 aa13.4□□□□□ -0.26
UBE4B-210ENST00000488228 MRIQ9BWK5 157 aa13.4□□□□□ -0.26
UBE4B-210ENST00000488228 PPP4R2Q9NY27 417 aa13.4□□□□□ -0.26
UBE4B-210ENST00000488228 CNTNAP1P78357 1384 aa13.4□□□□□ -0.26
UBE4B-210ENST00000488228 ZNF532Q9HCE3 1301 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 ATAD5Q96QE3 1844 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 GPR75-ASB3A0A0A6YYF3 556 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 C1QTNF8P60827 252 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 NFIAQ12857 509 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 SLC9C2Q5TAH2 1124 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 PRAMEF18Q5VWM3 479 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 ERICH6BQ5W0A0 696 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 CDC37L1Q7L3B6 337 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 CDAN1Q8IWY9 1227 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 KBTBD3Q8NAB2 608 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 CDCA5Q96FF9 252 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 FSD1Q9BTV5 496 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 ZNF408Q9H9D4 720 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 AATFQ9NY61 560 aaKnown RBP eCLIP13.39□□□□□ -0.276e-7■□□□□ 11.1
UBE4B-210ENST00000488228 TMOD2Q9NZR1 351 aa13.39□□□□□ -0.27
UBE4B-210ENST00000488228 TCRBV5S4A2TA0A5A2 114 aa13.38□□□□□ -0.27
UBE4B-210ENST00000488228 LDHCP07864 332 aa13.38□□□□□ -0.27
UBE4B-210ENST00000488228 ADD2P35612 726 aa13.38□□□□□ -0.27
UBE4B-210ENST00000488228 RHBDL3P58872 404 aa13.38□□□□□ -0.27
UBE4B-210ENST00000488228 DYNLL1P63167 89 aaKnown RBP13.38□□□□□ -0.27
UBE4B-210ENST00000488228 SH3RF3Q8TEJ3 882 aaPredicted RBP13.38□□□□□ -0.27
UBE4B-210ENST00000488228 FAM163AQ96GL9 167 aaPredicted RBP13.38□□□□□ -0.27
UBE4B-210ENST00000488228 NOL10Q9BSC4 688 aaKnown RBP13.38□□□□□ -0.27
UBE4B-210ENST00000488228 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.38□□□□□ -0.27
UBE4B-210ENST00000488228 OSBPL3Q9H4L5 887 aa13.38□□□□□ -0.27
UBE4B-210ENST00000488228 USP40Q9NVE5 1235 aa13.38□□□□□ -0.27
UBE4B-210ENST00000488228 RPAP1Q9BWH6 1393 aaPredicted RBP13.37□□□□□ -0.27
UBE4B-210ENST00000488228 WDHD1O75717 1129 aaPredicted RBP13.37□□□□□ -0.27
UBE4B-210ENST00000488228 PICALMQ13492 652 aa13.37□□□□□ -0.27
UBE4B-210ENST00000488228 RASA3Q14644 834 aa13.37□□□□□ -0.27
UBE4B-210ENST00000488228 TMEM39BQ9GZU3 492 aa13.37□□□□□ -0.27
UBE4B-210ENST00000488228 DEFB129Q9H1M3 183 aa13.37□□□□□ -0.27
UBE4B-210ENST00000488228 DOCK1Q14185 1865 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 TRIM6-TRIM34B2RNG4 842 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 CELF2O95319 508 aaKnown RBP13.36□□□□□ -0.27
UBE4B-210ENST00000488228 GSPT1P15170 499 aaKnown RBP13.36□□□□□ -0.27
UBE4B-210ENST00000488228 RGS3P49796 1198 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 TCP10Q12799 353 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 TNFAIP1Q13829 316 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 TTC22Q5TAA0 569 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 TEX11Q8IYF3 940 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 LCORLQ8N3X6 602 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 DDX4Q9NQI0 724 aaKnown RBP13.36□□□□□ -0.27
UBE4B-210ENST00000488228 FAM198AQ9UFP1 575 aa13.36□□□□□ -0.27
UBE4B-210ENST00000488228 LAMA4Q16363 1823 aa13.35□□□□□ -0.27
UBE4B-210ENST00000488228 IGSF3O75054 1194 aa13.35□□□□□ -0.27
UBE4B-210ENST00000488228 MBD4O95243 580 aa13.35□□□□□ -0.27
UBE4B-210ENST00000488228 BAG3O95817 575 aa13.35□□□□□ -0.27
UBE4B-210ENST00000488228 EVI5LQ96CN4 794 aa13.35□□□□□ -0.27
UBE4B-210ENST00000488228 RIOK1Q9BRS2 568 aaKnown RBP13.35□□□□□ -0.27
UBE4B-210ENST00000488228 ARMT1Q9H993 441 aa13.35□□□□□ -0.27
UBE4B-210ENST00000488228 COL2A1P02458 1487 aaPredicted RBP13.35□□□□□ -0.27
UBE4B-210ENST00000488228 MAGEB6P1A0A0J9YX57 407 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 RNF113AO15541 343 aaKnown RBP13.34□□□□□ -0.27
UBE4B-210ENST00000488228 TNNI2P48788 182 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 APLP1P51693 650 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 PPP4CP60510 307 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 HTRA3P83110 453 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 UBE3CQ15386 1083 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 NBPF12Q5TAG4 269 aaPredicted RBP13.34□□□□□ -0.27
UBE4B-210ENST00000488228 FKBP1CQ5VVH2 108 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 ZSCAN25Q6NSZ9 544 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 MAPKAPK5Q8IW41 473 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 ZFPM1Q8IX07 1006 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 RILPL2Q969X0 211 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 TEPSINQ96N21 525 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 IDI2Q9BXS1 227 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 FZD1Q9UP38 647 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 PPP2R3BQ9Y5P8 575 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 FLT1P17948 1338 aa13.34□□□□□ -0.27
UBE4B-210ENST00000488228 THSD7BQ9C0I4 1608 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms