RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 CD163Q86VB7 1156 aa8.9□□□□□ -0.98
USP48-209ENST00000487880 RUSC1Q9BVN2 902 aa8.9□□□□□ -0.98
USP48-209ENST00000487880 RNF208Q9H0X6 261 aa8.9□□□□□ -0.98
USP48-209ENST00000487880 AKTIPQ9H8T0 292 aa8.9□□□□□ -0.98
USP48-209ENST00000487880 KBTBD4Q9NVX7 518 aa8.9□□□□□ -0.98
USP48-209ENST00000487880 USP21Q9UK80 565 aa8.9□□□□□ -0.98
USP48-209ENST00000487880 SYNGAP1Q96PV0 1343 aa8.89□□□□□ -0.99
USP48-209ENST00000487880 ZNF862O60290 1169 aa8.89□□□□□ -0.99
USP48-209ENST00000487880 TRIM37O94972 964 aa8.89□□□□□ -0.99
USP48-209ENST00000487880 TFE3P19532 575 aaPredicted RBP8.89□□□□□ -0.99
USP48-209ENST00000487880 EXOSC6Q5RKV6 272 aaKnown RBP8.89□□□□□ -0.99
USP48-209ENST00000487880 GAL3ST3Q96A11 431 aa8.89□□□□□ -0.99
USP48-209ENST00000487880 SUGCTQ9HAC7 445 aa8.89□□□□□ -0.99
USP48-209ENST00000487880 TLR6Q9Y2C9 796 aa8.89□□□□□ -0.99
USP48-209ENST00000487880 ITGB2P05107 769 aa8.88□□□□□ -0.99
USP48-209ENST00000487880 NOS3P29474 1203 aa8.88□□□□□ -0.99
USP48-209ENST00000487880 KIF4BQ2VIQ3 1234 aa8.88□□□□□ -0.99
USP48-209ENST00000487880 MAP1SQ66K74 1059 aaPredicted RBP8.88□□□□□ -0.99
USP48-209ENST00000487880 MPRIPQ6WCQ1 1025 aa8.88□□□□□ -0.99
USP48-209ENST00000487880 AGGF1Q8N302 714 aaeCLIP8.88□□□□□ -0.99
USP48-209ENST00000487880 SMG8Q8ND04 991 aaKnown RBP8.88□□□□□ -0.99
USP48-209ENST00000487880 WFDC12Q8WWY7 111 aa8.88□□□□□ -0.99
USP48-209ENST00000487880 ZC3H12CQ9C0D7 883 aaKnown RBP8.88□□□□□ -0.99
USP48-209ENST00000487880 CBX8Q9HC52 389 aa8.88□□□□□ -0.99
USP48-209ENST00000487880 KCNQ5Q9NR82 932 aa8.88□□□□□ -0.99
USP48-209ENST00000487880 C1QTNF9BB2RNN3 333 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 F6X3S4 739 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 ALX3O95076 343 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 LMNB2Q03252 620 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 NT5DC4Q86YG4 428 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 RELL1Q8IUW5 271 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 TRIM42Q8IWZ5 723 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 GPBAR1Q8TDU6 330 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 KCNB2Q92953 911 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 WDR89Q96FK6 387 aaPredicted RBP8.87□□□□□ -0.99
USP48-209ENST00000487880 WDR18Q9BV38 432 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 DDX41Q9UJV9 622 aaKnown RBP8.87□□□□□ -0.99
USP48-209ENST00000487880 PCDHGC5Q9Y5F6 944 aa8.87□□□□□ -0.99
USP48-209ENST00000487880 AOC2O75106 756 aa8.86□□□□□ -0.99
USP48-209ENST00000487880 TIAF1O95411 115 aa8.86□□□□□ -0.99
USP48-209ENST00000487880 GBP2P32456 591 aaPredicted RBP8.86□□□□□ -0.99
USP48-209ENST00000487880 RAD51AP2Q09MP3 1159 aa8.86□□□□□ -0.99
USP48-209ENST00000487880 PDE3AQ14432 1141 aa8.86□□□□□ -0.99
USP48-209ENST00000487880 C9orf131Q5VYM1 1079 aa8.86□□□□□ -0.99
USP48-209ENST00000487880 ANKRD34AQ69YU3 496 aa8.86□□□□□ -0.99
USP48-209ENST00000487880 CCDC84Q86UT8 332 aaPredicted RBP8.86□□□□□ -0.99
USP48-209ENST00000487880 TXNRD3Q86VQ6 643 aa8.86□□□□□ -0.99
USP48-209ENST00000487880 PCDHB5Q9Y5E4 795 aa8.86□□□□□ -0.99
USP48-209ENST00000487880 LIG1P18858 919 aa8.85□□□□□ -0.99
USP48-209ENST00000487880 GARTP22102 1010 aa8.85□□□□□ -0.99
USP48-209ENST00000487880 IREB2P48200 963 aaKnown RBP8.85□□□□□ -0.99
USP48-209ENST00000487880 PTPN11Q06124 597 aaPredicted RBP8.85□□□□□ -0.99
USP48-209ENST00000487880 CAMK2GQ13555 558 aaPredicted RBP8.85□□□□□ -0.99
USP48-209ENST00000487880 ZNF394Q53GI3 561 aa8.85□□□□□ -0.99
USP48-209ENST00000487880 NUTM2GQ5VZR2 741 aa8.85□□□□□ -0.99
USP48-209ENST00000487880 USP48Q86UV5 1035 aa8.85□□□□□ -0.99
USP48-209ENST00000487880 PF4P02776 101 aa8.84□□□□□ -0.99
USP48-209ENST00000487880 RACK1P63244 317 aaKnown RBP8.84□□□□□ -0.99
USP48-209ENST00000487880 HNRNPUQ00839 825 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP48-209ENST00000487880 SEPT6Q14141 434 aa8.84□□□□□ -0.99
USP48-209ENST00000487880 PLA2G4EQ3MJ16 856 aa8.84□□□□□ -0.99
USP48-209ENST00000487880 DZIP1LQ8IYY4 767 aaKnown RBP8.84□□□□□ -0.99
USP48-209ENST00000487880 SSBP4Q9BWG4 385 aaPredicted RBP8.84□□□□□ -0.99
USP48-209ENST00000487880 MIR1-1HGQ9H1L0 117 aa8.84□□□□□ -0.99
USP48-209ENST00000487880 CYP4F12Q9HCS2 524 aa8.84□□□□□ -0.99
USP48-209ENST00000487880 ADAMTS1Q9UHI8 967 aa8.84□□□□□ -0.99
USP48-209ENST00000487880 PCDHGB7Q9Y5F8 929 aa8.84□□□□□ -0.99
USP48-209ENST00000487880 ADH5P11766 374 aa8.83□□□□□ -1
USP48-209ENST00000487880 EIF4A3P38919 411 aaKnown RBP8.83□□□□□ -1
USP48-209ENST00000487880 CEP41Q9BYV8 373 aa8.83□□□□□ -1
USP48-209ENST00000487880 FAM221AA4D161 298 aa8.82□□□□□ -1
USP48-209ENST00000487880 MINDY4BA8MYZ0 360 aa8.82□□□□□ -1
USP48-209ENST00000487880 GREM1O60565 184 aa8.82□□□□□ -1
USP48-209ENST00000487880 PREPP48147 710 aa8.82□□□□□ -1
USP48-209ENST00000487880 FDX2Q6P4F2 183 aa8.82□□□□□ -1
USP48-209ENST00000487880 FBXL19Q6PCT2 694 aa8.82□□□□□ -1
USP48-209ENST00000487880 ACSBG1Q96GR2 724 aa8.82□□□□□ -1
USP48-209ENST00000487880 FAM46AQ96IP4 442 aaKnown RBP8.82□□□□□ -1
USP48-209ENST00000487880 MEGF10Q96KG7 1140 aa8.82□□□□□ -1
USP48-209ENST00000487880 UBL7Q96S82 380 aaPredicted RBP8.82□□□□□ -1
USP48-209ENST00000487880 TGIF2Q9GZN2 237 aa8.82□□□□□ -1
USP48-209ENST00000487880 GSX1Q9H4S2 264 aaPredicted RBP8.82□□□□□ -1
USP48-209ENST00000487880 PPP1R9AQ9ULJ8 1098 aa8.82□□□□□ -1
USP48-209ENST00000487880 SLFN14P0C7P3 912 aa8.81□□□□□ -1
USP48-209ENST00000487880 GLB1P16278 677 aa8.81□□□□□ -1
USP48-209ENST00000487880 LMNB1P20700 586 aa8.81□□□□□ -1
USP48-209ENST00000487880 FAM160A1Q05DH4 1040 aa8.81□□□□□ -1
USP48-209ENST00000487880 SOX4Q06945 474 aaPredicted RBP8.81□□□□□ -1
USP48-209ENST00000487880 ZC3H12AQ5D1E8 599 aaKnown RBP8.81□□□□□ -1
USP48-209ENST00000487880 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.81□□□□□ -1
USP48-209ENST00000487880 BNC2Q6ZN30 1099 aaPredicted RBP8.81□□□□□ -1
USP48-209ENST00000487880 ZNF654Q8IZM8 581 aa8.81□□□□□ -1
USP48-209ENST00000487880 C2CD4AQ8NCU7 369 aaPredicted RBP8.81□□□□□ -1
USP48-209ENST00000487880 RAD18Q9NS91 495 aa8.81□□□□□ -1
USP48-209ENST00000487880 CRIM1Q9NZV1 1036 aa8.81□□□□□ -1
USP48-209ENST00000487880 TMPRSS2O15393 492 aa8.8□□□□□ -1
USP48-209ENST00000487880 F13A1P00488 732 aa8.8□□□□□ -1
USP48-209ENST00000487880 DRD2P14416 443 aa8.8□□□□□ -1
USP48-209ENST00000487880 ID3Q02535 119 aa8.8□□□□□ -1
USP48-209ENST00000487880 UVSSAQ2YD98 709 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms