RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 ZNF384Q8TF68 577 aa11.27□□□□□ -0.61
PDGFC-202ENST00000422544 NSUN4Q96CB9 384 aaKnown RBP11.27□□□□□ -0.61
PDGFC-202ENST00000422544 ZBED3Q96IU2 234 aaPredicted RBP11.27□□□□□ -0.61
PDGFC-202ENST00000422544 ZDHHC15Q96MV8 337 aa11.27□□□□□ -0.61
PDGFC-202ENST00000422544 MAST3O60307 1309 aa11.27□□□□□ -0.61
PDGFC-202ENST00000422544 AOX1Q06278 1338 aa11.27□□□□□ -0.61
PDGFC-202ENST00000422544 MKI67P46013 3256 aaKnown RBP11.26□□□□□ -0.61
PDGFC-202ENST00000422544 RGS19P49795 217 aa11.26□□□□□ -0.61
PDGFC-202ENST00000422544 GSTO1P78417 241 aa11.26□□□□□ -0.61
PDGFC-202ENST00000422544 MAP3K12Q12852 859 aa11.26□□□□□ -0.61
PDGFC-202ENST00000422544 ANGEL2Q5VTE6 544 aaKnown RBP11.26□□□□□ -0.61
PDGFC-202ENST00000422544 NAA16Q6N069 864 aaPredicted RBP11.26□□□□□ -0.61
PDGFC-202ENST00000422544 APOBEC3HQ6NTF7 200 aaKnown RBP11.26□□□□□ -0.61
PDGFC-202ENST00000422544 SKAP1Q86WV1 359 aa11.26□□□□□ -0.61
PDGFC-202ENST00000422544 ZC3H15Q8WU90 426 aaKnown RBP11.26□□□□□ -0.61
PDGFC-202ENST00000422544 ABHD8Q96I13 439 aa11.26□□□□□ -0.61
PDGFC-202ENST00000422544 TDRD3Q9H7E2 651 aaKnown RBP11.26□□□□□ -0.61
PDGFC-202ENST00000422544 PGAP2Q9UHJ9 254 aa11.26□□□□□ -0.61
PDGFC-202ENST00000422544 SCAF8Q9UPN6 1271 aaKnown RBP11.26□□□□□ -0.61
PDGFC-202ENST00000422544 DAGLAQ9Y4D2 1042 aa11.26□□□□□ -0.61
PDGFC-202ENST00000422544 CLRN2A0PK11 232 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 CYP7A1P22680 504 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 SLC9C2Q5TAH2 1124 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 SLF2Q8IX21 1173 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 CNTROBQ8N137 903 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 MAGEB6Q8N7X4 407 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 DCPSQ96C86 337 aaKnown RBP11.25□□□□□ -0.61
PDGFC-202ENST00000422544 FAM163AQ96GL9 167 aaPredicted RBP11.25□□□□□ -0.61
PDGFC-202ENST00000422544 OSBPL3Q9H4L5 887 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 GGA3Q9NZ52 723 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 PSME4Q14997 1843 aa11.25□□□□□ -0.61
PDGFC-202ENST00000422544 ZNF646O15015 1829 aaPredicted RBP11.24□□□□□ -0.61
PDGFC-202ENST00000422544 MYO1BO43795 1136 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 LDHCP07864 332 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 BTDP43251 543 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 FMR1Q06787 632 aaKnown RBP eCLIP11.24□□□□□ -0.61
PDGFC-202ENST00000422544 SLFNL1Q499Z3 407 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 CDC42EP5Q6NZY7 148 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 DLK2Q6UY11 383 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 ADGRA1Q86SQ6 560 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 USP48Q86UV5 1035 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 USP40Q9NVE5 1235 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 ZNF70Q9UC06 446 aaPredicted RBP11.24□□□□□ -0.61
PDGFC-202ENST00000422544 MROH7-TTC4A0A0A0MT08 1334 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 GAKO14976 1311 aa11.24□□□□□ -0.61
PDGFC-202ENST00000422544 GPR75-ASB3A0A0A6YYF3 556 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 IGSF3O75054 1194 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 CHGBP05060 677 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 PDE6AP16499 860 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 CTCFP49711 727 aaPredicted RBP11.23□□□□□ -0.61
PDGFC-202ENST00000422544 CACNB3P54284 484 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 SPDYE2Q495Y8 402 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 CDC37L1Q7L3B6 337 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 KRT26Q7Z3Y9 468 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 SULF1Q8IWU6 871 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 KBTBD3Q8NAB2 608 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 GLIS2Q9BZE0 524 aaPredicted RBP11.23□□□□□ -0.61
PDGFC-202ENST00000422544 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.23□□□□□ -0.61
PDGFC-202ENST00000422544 VEZTQ9HBM0 779 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 AKAP11Q9UKA4 1901 aa11.23□□□□□ -0.61
PDGFC-202ENST00000422544 POLR2AP24928 1970 aaKnown RBP11.23□□□□□ -0.61
PDGFC-202ENST00000422544 TCRBV5S4A2TA0A5A2 114 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 RASSF10A6NK89 507 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 TRIM6-TRIM34B2RNG4 842 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 TCP10L2B9ZVM9 353 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 ADM5C9JUS6 153 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 TRAF5O00463 557 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 ADD2P35612 726 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 PRAMEF18Q5VWM3 479 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 MIGA1Q8NAN2 632 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 RILPL2Q969X0 211 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 EVI5LQ96CN4 794 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 FSD1Q9BTV5 496 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 ZNF532Q9HCE3 1301 aa11.22□□□□□ -0.61
PDGFC-202ENST00000422544 AATFQ9NY61 560 aaKnown RBP eCLIP11.22□□□□□ -0.61
PDGFC-202ENST00000422544 PITPNM2Q9BZ72 1349 aa11.21□□□□□ -0.61
PDGFC-202ENST00000422544 BAG3O95817 575 aa11.21□□□□□ -0.61
PDGFC-202ENST00000422544 RHBDL3P58872 404 aa11.21□□□□□ -0.61
PDGFC-202ENST00000422544 PPP4CP60510 307 aa11.21□□□□□ -0.61
PDGFC-202ENST00000422544 DYNLL1P63167 89 aaKnown RBP11.21□□□□□ -0.61
PDGFC-202ENST00000422544 ZSCAN25Q6NSZ9 544 aa11.21□□□□□ -0.61
PDGFC-202ENST00000422544 APOBEC3FQ8IUX4 373 aaKnown RBP11.21□□□□□ -0.61
PDGFC-202ENST00000422544 SH3RF3Q8TEJ3 882 aaPredicted RBP11.21□□□□□ -0.61
PDGFC-202ENST00000422544 NOL10Q9BSC4 688 aaKnown RBP11.21□□□□□ -0.61
PDGFC-202ENST00000422544 DEFB129Q9H1M3 183 aa11.21□□□□□ -0.61
PDGFC-202ENST00000422544 TMOD2Q9NZR1 351 aa11.21□□□□□ -0.61
PDGFC-202ENST00000422544 HTTP42858 3142 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 RNF113AO15541 343 aaKnown RBP11.2□□□□□ -0.62
PDGFC-202ENST00000422544 ABCB7O75027 752 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 GSPT1P15170 499 aaKnown RBP11.2□□□□□ -0.62
PDGFC-202ENST00000422544 RGS3P49796 1198 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 TCP10Q12799 353 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 NFIAQ12857 509 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 RASA3Q14644 834 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 UBE3CQ15386 1083 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 TTC22Q5TAA0 569 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 TMED8Q6PL24 325 aaPredicted RBP11.2□□□□□ -0.62
PDGFC-202ENST00000422544 CENPFP49454 3210 aa11.2□□□□□ -0.62
PDGFC-202ENST00000422544 MYH13Q9UKX3 1938 aa11.19□□□□□ -0.62
PDGFC-202ENST00000422544 MAGEB6P1A0A0J9YX57 407 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms