RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 KRT80Q6KB66 452 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 CYP26C1Q6V0L0 522 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 STX17P56962 302 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 PPANQ9NQ55 473 aaKnown RBP9.73□□□□□ -0.85
LIG3-202ENST00000378526 ST20-MTHFSA0A0A6YYL1 179 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 TTF1Q15361 905 aaPredicted RBP9.73□□□□□ -0.85
LIG3-202ENST00000378526 FAM210AQ96ND0 272 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 MAD1L1Q9Y6D9 718 aa9.73□□□□□ -0.85
LIG3-202ENST00000378526 UBA7P41226 1012 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 PPP1R2P41236 205 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 TRAF1Q13077 416 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 SLC38A10Q9HBR0 1119 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 ANLNQ9NQW6 1124 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 BATF3Q9NR55 127 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 TMEM191CA6NGB0 347 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 TMEM191BP0C7N4 346 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 TYRO3Q06418 890 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 RPS6KA2Q15349 733 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 C6orf118Q5T5N4 469 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 CCDC197Q8NCU1 140 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 BIN1O00499 593 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 ATF7IPQ6VMQ6 1270 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 TRIM42Q8IWZ5 723 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.72□□□□□ -0.85
LIG3-202ENST00000378526 C4BPBP20851 252 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 NBPF20Q3BBV1 942 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 GIMAP6Q6P9H5 292 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 SYCE1Q8N0S2 351 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 ZFYVE1Q9HBF4 777 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 SUFUQ9UMX1 484 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 CAPN9O14815 690 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 RAB14P61106 215 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 UAP1Q16222 522 aaPredicted RBP9.72□□□□□ -0.85
LIG3-202ENST00000378526 RASSF10A6NK89 507 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 GNGT1P63211 74 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 KIF6Q6ZMV9 814 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 FGFR1OP2Q9NVK5 253 aa9.72□□□□□ -0.85
LIG3-202ENST00000378526 ZSCAN22P10073 491 aaPredicted RBP9.72□□□□□ -0.85
LIG3-202ENST00000378526 CCDC194A0A1B0GVG4 234 aa9.71□□□□□ -0.85
LIG3-202ENST00000378526 IQCA1LA6NCM1 817 aa9.71□□□□□ -0.85
LIG3-202ENST00000378526 PTGS1P23219 599 aa9.71□□□□□ -0.85
LIG3-202ENST00000378526 ATP2B2Q01814 1243 aa9.71□□□□□ -0.85
LIG3-202ENST00000378526 CWF19L2Q2TBE0 894 aaKnown RBP9.71□□□□□ -0.85
LIG3-202ENST00000378526 GUCY2CP25092 1073 aa9.71□□□□□ -0.85
LIG3-202ENST00000378526 FERMT3Q86UX7 667 aa9.71□□□□□ -0.85
LIG3-202ENST00000378526 MRPS26Q9BYN8 205 aaKnown RBP9.71□□□□□ -0.85
LIG3-202ENST00000378526 GLRX3O76003 335 aaKnown RBP9.71□□□□□ -0.85
LIG3-202ENST00000378526 CCDC82Q8N4S0 544 aa9.71□□□□□ -0.85
LIG3-202ENST00000378526 PARVBQ9HBI1 364 aa9.71□□□□□ -0.85
LIG3-202ENST00000378526 RASGRF2O14827 1237 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 PYGLP06737 847 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 EEF2P13639 858 aaKnown RBP9.71□□□□□ -0.86
LIG3-202ENST00000378526 KRT5P13647 590 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 HMG20BQ9P0W2 317 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 ZNF711Q9Y462 761 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 WRNQ14191 1432 aaPredicted RBP eCLIP9.71□□□□□ -0.86
LIG3-202ENST00000378526 EFCAB8A8MWE9 144 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 UBXN1Q04323 297 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 ATL3Q6DD88 541 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 EXOC4Q96A65 974 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 COQ7Q99807 217 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 DAB1O75553 588 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 ST13P50502 369 aaKnown RBP9.71□□□□□ -0.86
LIG3-202ENST00000378526 CUL5Q93034 780 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 NOX5Q96PH1 765 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 NOB1Q9ULX3 412 aaKnown RBP9.71□□□□□ -0.86
LIG3-202ENST00000378526 PACSIN2Q9UNF0 486 aaPredicted RBP9.71□□□□□ -0.86
LIG3-202ENST00000378526 GJB2P29033 226 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 NUTM2DQ5VT03 806 aaPredicted RBP9.71□□□□□ -0.86
LIG3-202ENST00000378526 NUTM2AQ8IVF1 878 aaPredicted RBP9.71□□□□□ -0.86
LIG3-202ENST00000378526 AOPEPQ8N6M6 819 aa9.71□□□□□ -0.86
LIG3-202ENST00000378526 EEF1B2P24534 225 aaKnown RBP9.7□□□□□ -0.86
LIG3-202ENST00000378526 CUL3Q13618 768 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 KRT71Q3SY84 523 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 FGD4Q96M96 766 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 RBM27Q9P2N5 1060 aaKnown RBP9.7□□□□□ -0.86
LIG3-202ENST00000378526 SLC12A7Q9Y666 1083 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 CAPRIN2Q6IMN6 1127 aaKnown RBP9.7□□□□□ -0.86
LIG3-202ENST00000378526 PIP4K2CQ8TBX8 421 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 LTV1Q96GA3 475 aaPredicted RBP9.7□□□□□ -0.86
LIG3-202ENST00000378526 STAT6P42226 847 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 TRPC1P48995 793 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 MAIP1Q8WWC4 291 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 HNRNPCL2B2RXH8 293 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 HNRNPCL1O60812 293 aaKnown RBP9.7□□□□□ -0.86
LIG3-202ENST00000378526 PSMD2Q13200 908 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 RB1CC1Q8TDY2 1594 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 IMPG2Q9BZV3 1241 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 NECTIN2Q92692 538 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 SERPINI1Q99574 410 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 ATP5HO75947 161 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 KRT15P19012 456 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 TRIML2Q8N7C3 387 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 SPZ1Q9BXG8 430 aa9.7□□□□□ -0.86
LIG3-202ENST00000378526 RNF41Q9H4P4 317 aaPredicted RBP9.7□□□□□ -0.86
LIG3-202ENST00000378526 DDX28Q9NUL7 540 aaKnown RBP9.7□□□□□ -0.86
LIG3-202ENST00000378526 CHGBP05060 677 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 PRIM1P49642 420 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 TRIM58Q8NG06 486 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 ERMNQ8TAM6 284 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms