RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 IFNL3Q8IZI9 196 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 MAGEB6Q8N7X4 407 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 MRFAP1L1Q96HT8 127 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 A0A1B0GVL5 298 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 DHX40Q8IX18 779 aaKnown RBP25.73■■□□□ 1.71
UPF3A-201ENST00000351487 LY9Q9HBG7 655 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 SPATA31A1Q5TZJ5 1347 aa25.73■■□□□ 1.71
UPF3A-201ENST00000351487 MBD4O95243 580 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 LIFRP42702 1097 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 CCDC152Q4G0S7 254 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 CEP57L1Q8IYX8 460 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 ALG1Q9BT22 464 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 NAPBQ9H115 298 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 SEC31BQ9NQW1 1179 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 CLIP2Q9UDT6 1046 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 CDC27P30260 824 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 GTF2F1P35269 517 aaKnown RBP eCLIP25.72■■□□□ 1.712e-6■■■■□ 26
UPF3A-201ENST00000351487 NID2Q14112 1375 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 PDCL3Q9H2J4 239 aa25.72■■□□□ 1.71
UPF3A-201ENST00000351487 BCL9LQ86UU0 1499 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 PNPLA7Q6ZV29 1317 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 ZBTB43O43298 467 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 ATP6V1AP38606 617 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 NTRK3Q16288 839 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 DDB1Q16531 1140 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 AXDND1Q5T1B0 1012 aaPredicted RBP25.71■■□□□ 1.71
UPF3A-201ENST00000351487 SENP2Q9HC62 589 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 NRBP1Q9UHY1 535 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 LOC102724428A0A0B4J2F2 783 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 NTSR2O95665 410 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 SIK1P57059 783 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 SDF4Q9BRK5 362 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 CNNM2Q9H8M5 875 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 A0A1B0GUL6 1792 aa25.71■■□□□ 1.71
UPF3A-201ENST00000351487 BECN2A8MW95 431 aa25.7■■□□□ 1.7
UPF3A-201ENST00000351487 MICU3Q86XE3 530 aa25.7■■□□□ 1.7
UPF3A-201ENST00000351487 NAT10Q9H0A0 1025 aaKnown RBP25.7■■□□□ 1.7
UPF3A-201ENST00000351487 COL5A3P25940 1745 aaPredicted RBP25.7■■□□□ 1.7
UPF3A-201ENST00000351487 STK36Q9NRP7 1315 aa25.7■■□□□ 1.7
UPF3A-201ENST00000351487 GNAT2P19087 354 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 SLC39A14Q15043 492 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 TMEM67Q5HYA8 995 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 KRT40Q6A162 431 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 VPS37DQ86XT2 251 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 KIAA1468Q9P260 1216 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 GSG1L2A8MUP6 293 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 SNAP23O00161 211 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 CMA1P23946 247 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 IGHMBP2P38935 993 aaKnown RBP25.69■■□□□ 1.7
UPF3A-201ENST00000351487 AIFM3Q96NN9 605 aa25.69■■□□□ 1.7
UPF3A-201ENST00000351487 FAM217BQ9NTX9 383 aaPredicted RBP25.69■■□□□ 1.7
UPF3A-201ENST00000351487 RXRAP19793 462 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 AKNAD1Q5T1N1 836 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 MAP7D2Q96T17 732 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 KRT23Q9C075 422 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 ARMT1Q9H993 441 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 GOLGA8AA7E2F4 631 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 LRMPQ12912 555 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 ITPK1Q13572 414 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 BPIFA3Q9BQP9 254 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 ZSWIM5Q9P217 1185 aa25.68■■□□□ 1.7
UPF3A-201ENST00000351487 NFXL1Q6ZNB6 911 aa25.67■■□□□ 1.7
UPF3A-201ENST00000351487 ZNF831Q5JPB2 1677 aa25.67■■□□□ 1.7
UPF3A-201ENST00000351487 FAM177BA6PVY3 158 aa25.67■■□□□ 1.7
UPF3A-201ENST00000351487 RANBP6O60518 1105 aaKnown RBP25.67■■□□□ 1.7
UPF3A-201ENST00000351487 IARSP41252 1262 aaKnown RBP25.67■■□□□ 1.7
UPF3A-201ENST00000351487 CCDC144BQ3MJ40 725 aa25.67■■□□□ 1.7
UPF3A-201ENST00000351487 CCDC144CPQ8IYA2 1237 aa25.67■■□□□ 1.7
UPF3A-201ENST00000351487 STAG1Q8WVM7 1258 aa25.67■■□□□ 1.7
UPF3A-201ENST00000351487 PHKBQ93100 1093 aa25.67■■□□□ 1.7
UPF3A-201ENST00000351487 TACC3Q9Y6A5 838 aa25.67■■□□□ 1.7
UPF3A-201ENST00000351487 PPP6R2O75170 966 aa25.66■■□□□ 1.7
UPF3A-201ENST00000351487 ZNF202O95125 648 aa25.66■■□□□ 1.7
UPF3A-201ENST00000351487 U2AF2P26368 475 aaKnown RBP eCLIP25.66■■□□□ 1.74e-7■■■■■ 39.1
UPF3A-201ENST00000351487 CTDSPL2Q05D32 466 aa25.66■■□□□ 1.7
UPF3A-201ENST00000351487 MTA3Q9BTC8 594 aa25.66■■□□□ 1.7
UPF3A-201ENST00000351487 NIP7Q9Y221 180 aaKnown RBP eCLIP25.66■■□□□ 1.7
UPF3A-201ENST00000351487 MROH7-TTC4A0A0A0MT08 1334 aa25.66■■□□□ 1.7
UPF3A-201ENST00000351487 CASZ1Q86V15 1759 aa25.66■■□□□ 1.7
UPF3A-201ENST00000351487 A0A087WWV3 80 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 BCAMP50895 628 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 RBM10P98175 930 aaKnown RBP25.65■■□□□ 1.7
UPF3A-201ENST00000351487 MARCH10Q8NA82 808 aaPredicted RBP25.65■■□□□ 1.7
UPF3A-201ENST00000351487 ERCC4Q92889 916 aaPredicted RBP25.65■■□□□ 1.7
UPF3A-201ENST00000351487 NACAP1Q9BZK3 213 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 SLC12A7Q9Y666 1083 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 IFIT3O14879 490 aaKnown RBP25.65■■□□□ 1.7
UPF3A-201ENST00000351487 PFKFB1P16118 471 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 LCORLQ8N3X6 602 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 AOPEPQ8N6M6 819 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 CACTINQ8WUQ7 758 aaKnown RBP25.65■■□□□ 1.7
UPF3A-201ENST00000351487 INCENPQ9NQS7 918 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 FAM13BQ9NYF5 915 aa25.65■■□□□ 1.7
UPF3A-201ENST00000351487 COL4A1P02462 1669 aa25.64■■□□□ 1.7
UPF3A-201ENST00000351487 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.64■■□□□ 1.7
UPF3A-201ENST00000351487 WDHD1O75717 1129 aaPredicted RBP25.64■■□□□ 1.7
UPF3A-201ENST00000351487 CHRNDQ07001 517 aa25.64■■□□□ 1.7
UPF3A-201ENST00000351487 PTPAQ15257 358 aa25.64■■□□□ 1.7
UPF3A-201ENST00000351487 MFSD6Q6ZSS7 791 aa25.64■■□□□ 1.7
UPF3A-201ENST00000351487 ACSBG1Q96GR2 724 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms