RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 EIF4A2Q14240 407 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 FAM160B1Q5W0V3 765 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 HOOK3Q86VS8 718 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 CAMSAP1Q5T5Y3 1602 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 EPB41L2O43491 1005 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 XPOTO43592 962 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 ALDH1L1O75891 902 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 PRMT2P55345 433 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 UBE4AQ14139 1066 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 ILDR2Q71H61 639 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 PCSK9Q8NBP7 692 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 SYNCQ9H7C4 482 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 HAUS2Q9NVX0 235 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 IFT57Q9NWB7 429 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 KCNG1Q9UIX4 513 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 KDM5CP41229 1560 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 SMC2O95347 1197 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 KRT32Q14532 448 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 MIGA2Q7L4E1 593 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 LINS1Q8NG48 757 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 NMRK2Q9NPI5 230 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 ZMYND10O75800 440 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 ERLIN2O94905 339 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 ZNF784Q8NCA9 323 aaPredicted RBP9.65□□□□□ -0.86
HMGB1-203ENST00000341423 EVA1BQ9NVM1 165 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 ANKARQ7Z5J8 1434 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 IRX6P78412 446 aaPredicted RBP9.65□□□□□ -0.86
HMGB1-203ENST00000341423 LIN9Q5TKA1 542 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 GPC2Q8N158 579 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 PSMD1Q99460 953 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 ZNHIT6Q9NWK9 470 aaKnown RBP9.65□□□□□ -0.86
HMGB1-203ENST00000341423 CCDC39Q9UFE4 941 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 USP17L5A8MUK1 530 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 ICA1Q05084 483 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 YME1L1Q96TA2 773 aa9.65□□□□□ -0.86
HMGB1-203ENST00000341423 SUPT6HQ7KZ85 1726 aaKnown RBP9.65□□□□□ -0.87
HMGB1-203ENST00000341423 GOLIM4O00461 696 aa9.65□□□□□ -0.87
HMGB1-203ENST00000341423 RC3H1Q5TC82 1133 aaKnown RBP9.65□□□□□ -0.87
HMGB1-203ENST00000341423 BICD2Q8TD16 824 aa9.65□□□□□ -0.87
HMGB1-203ENST00000341423 DHX36Q9H2U1 1008 aaKnown RBP9.65□□□□□ -0.87
HMGB1-203ENST00000341423 MAPKBP1O60336 1514 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 GCLCP48506 637 aaPredicted RBP9.64□□□□□ -0.87
HMGB1-203ENST00000341423 SCARF1Q14162 830 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 CYP4F22Q6NT55 531 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 STARD7Q9NQZ5 370 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 BOLA2Q9H3K6 86 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 SEPT11Q9NVA2 429 aaKnown RBP9.64□□□□□ -0.87
HMGB1-203ENST00000341423 PTPRCP08575 1304 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 UPP2O95045 317 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 STAG3L1P0CL83 205 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 IGBP1P78318 339 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 RASSF7Q02833 373 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 SLC9C2Q5TAH2 1124 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 SDE2Q6IQ49 451 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 MRPL11Q9Y3B7 192 aaKnown RBP9.64□□□□□ -0.87
HMGB1-203ENST00000341423 ABCC1P33527 1531 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 TESPA1A2RU30 521 aaPredicted RBP9.64□□□□□ -0.87
HMGB1-203ENST00000341423 GRM8O00222 908 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 C7orf61Q8IZ16 206 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 RNF34Q969K3 372 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 ZNF496Q96IT1 587 aaPredicted RBP9.64□□□□□ -0.87
HMGB1-203ENST00000341423 CCDC17Q96LX7 622 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 MROH5Q6ZUA9 1318 aa9.64□□□□□ -0.87
HMGB1-203ENST00000341423 NKTRP30414 1462 aaKnown RBP9.63□□□□□ -0.87
HMGB1-203ENST00000341423 RAB11FIP3O75154 756 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 NBPF7P0C2Y1 421 aaPredicted RBP9.63□□□□□ -0.87
HMGB1-203ENST00000341423 MAPKAPK5Q8IW41 473 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 SEMA3EO15041 775 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 PSMC4P43686 418 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 MMP14P50281 582 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 IFIT1BQ5T764 474 aaKnown RBP9.63□□□□□ -0.87
HMGB1-203ENST00000341423 CCDC73Q6ZRK6 1079 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 COL23A1Q86Y22 540 aaPredicted RBP9.63□□□□□ -0.87
HMGB1-203ENST00000341423 PIGBQ92521 554 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 ANKRD36BQ8N2N9 1353 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 FKBP1BP68106 108 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 NFIXQ14938 502 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 ALG1Q9BT22 464 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 NRBP2Q9NSY0 501 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 CFBP00751 764 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 NAPAP54920 295 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 TMTC2Q8N394 836 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 NLRP7Q8WX94 980 aa9.63□□□□□ -0.87
HMGB1-203ENST00000341423 NAP1L4Q99733 375 aaKnown RBP9.63□□□□□ -0.87
HMGB1-203ENST00000341423 ASB14A6NK59 587 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 BECN2A8MW95 431 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 PARP1P09874 1014 aaKnown RBP9.62□□□□□ -0.87
HMGB1-203ENST00000341423 PPP2R1AP30153 589 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 NAA30Q147X3 362 aaPredicted RBP9.62□□□□□ -0.87
HMGB1-203ENST00000341423 MIGA1Q8NAN2 632 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 GPRC5AQ8NFJ5 357 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 PCDHB9Q9Y5E1 797 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 ERBB4Q15303 1308 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 NCAM2O15394 837 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 XRCC6P12956 609 aaKnown RBP eCLIP9.62□□□□□ -0.87
HMGB1-203ENST00000341423 KIF23Q02241 960 aaPredicted RBP9.62□□□□□ -0.87
HMGB1-203ENST00000341423 MMP19Q99542 508 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 GPCPD1Q9NPB8 672 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 MAP3K15Q6ZN16 1313 aa9.62□□□□□ -0.87
HMGB1-203ENST00000341423 IQCEQ6IPM2 695 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms