RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ZNF213O14771 459 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 BAG3O95817 575 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 PLCG2P16885 1265 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 RPS6KB1P23443 525 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 BLOC1S2Q6QNY1 142 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 NEK1Q96PY6 1258 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 NBPF3Q9H094 633 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 NAPBQ9H115 298 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 TAOK3Q9H2K8 898 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 ANAPC4Q9UJX5 808 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 COL4A5P29400 1685 aa17.74■□□□□ 0.43
CCDC88C-202ENST00000334448 WDR19Q8NEZ3 1342 aa17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 MYO3BQ8WXR4 1341 aa17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 PSME4Q14997 1843 aa17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 E7EWF7 191 aa17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 NFKBIEO00221 500 aa17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 PRKAB2O43741 272 aa17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 IARSP41252 1262 aaKnown RBP17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 DYNLL1P63167 89 aaKnown RBP17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 DIXDC1Q155Q3 683 aa17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 HHIPL2Q6UWX4 724 aa17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 MKRN1Q9UHC7 482 aaKnown RBP17.73■□□□□ 0.43
CCDC88C-202ENST00000334448 ARFGEF1Q9Y6D6 1849 aa17.72■□□□□ 0.43
CCDC88C-202ENST00000334448 SCN9AQ15858 1988 aa17.72■□□□□ 0.43
CCDC88C-202ENST00000334448 YDJCA8MPS7 323 aa17.72■□□□□ 0.43
CCDC88C-202ENST00000334448 NT5C2P49902 561 aa17.72■□□□□ 0.43
CCDC88C-202ENST00000334448 SBK1Q52WX2 424 aa17.72■□□□□ 0.43
CCDC88C-202ENST00000334448 AATFQ9NY61 560 aaKnown RBP eCLIP17.72■□□□□ 0.43
CCDC88C-202ENST00000334448 APPP05067 770 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 PCP11498 1178 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 TDO2P48775 406 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 RHBDL3P58872 404 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 CUL4AQ13619 759 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 ANKRD1Q15327 319 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 DHX32Q7L7V1 743 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 LARGE2Q8N3Y3 721 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 NLGN2Q8NFZ4 835 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 NOL10Q9BSC4 688 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 AGXT2Q9BYV1 514 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 DCP1AQ9NPI6 582 aaPredicted RBP17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 ZNF277Q9NRM2 450 aaPredicted RBP17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 PDRG1Q9NUG6 133 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 PPP1R1BQ9UD71 204 aaPredicted RBP17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 ZNRF3Q9ULT6 936 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 DAGLAQ9Y4D2 1042 aa17.71■□□□□ 0.43
CCDC88C-202ENST00000334448 VIL1P09327 827 aaKnown RBP17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 FGRP09769 529 aa17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 BTDP43251 543 aa17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 AK2P54819 239 aa17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 EXOSC10Q01780 885 aaKnown RBP17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 TBC1D10CQ8IV04 446 aa17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 MB21D2Q8IYB1 491 aaPredicted RBP17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 SDR42E1Q8WUS8 393 aa17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 STAG1Q8WVM7 1258 aa17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 ARPP21Q9UBL0 812 aaPredicted RBP17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 TTF2Q9UNY4 1162 aaKnown RBP17.7■□□□□ 0.42
CCDC88C-202ENST00000334448 ROBO3Q96MS0 1386 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 SLC4A3P48751 1232 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 NIM1KQ8IY84 436 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 TEKT1Q969V4 418 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 TMX3Q96JJ7 454 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 ZDHHC15Q96MV8 337 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 GMLQ99445 158 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 MTA3Q9BTC8 594 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 KCNQ5Q9NR82 932 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 SERPINA10Q9UK55 444 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 LIMCH1Q9UPQ0 1083 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 BCS1LQ9Y276 419 aa17.69■□□□□ 0.42
CCDC88C-202ENST00000334448 DDIT3P35638 169 aa17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 MMP14P50281 582 aa17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 HAND2P61296 217 aa17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 PPARAQ07869 468 aa17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 COL9A3Q14050 684 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 DDX60LQ5H9U9 1706 aaKnown RBP17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 RSBN1LQ6PCB5 846 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 NCOA7Q8NI08 942 aa17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 SH3RF3Q8TEJ3 882 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 ZSCAN31Q96LW9 406 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 RNF41Q9H4P4 317 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 CNNM2Q9H8M5 875 aa17.68■□□□□ 0.42
CCDC88C-202ENST00000334448 NPM3O75607 178 aaKnown RBP17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 CPA1P15085 419 aa17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 AKNAD1Q5T1N1 836 aa17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 CTR9Q6PD62 1173 aa17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 KLHL34Q8N239 644 aa17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 FBXW7Q969H0 707 aa17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 INTS4Q96HW7 963 aaKnown RBP17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 MXD3Q9BW11 206 aa17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 FHDC1Q9C0D6 1143 aaPredicted RBP17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 SH2B1Q9NRF2 756 aaPredicted RBP17.67■□□□□ 0.42
CCDC88C-202ENST00000334448 MYH2Q9UKX2 1941 aa17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 MCM5P33992 734 aa17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 CRKP46108 304 aa17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 EVCP57679 992 aa17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 TRDNQ13061 729 aa17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 TOB2Q14106 344 aaPredicted RBP17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 APOBEC3HQ6NTF7 200 aaKnown RBP17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 RALYLQ86SE5 291 aaKnown RBP17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 AGBL3Q8NEM8 1001 aa17.66■□□□□ 0.42
CCDC88C-202ENST00000334448 KRT23Q9C075 422 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms