RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 ADALQ6DHV7 355 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 HELBQ8NG08 1087 aaPredicted RBP18.7■□□□□ 0.58
USHBP1-202ENST00000324554 MRPS27Q92552 414 aaKnown RBP18.7■□□□□ 0.58
USHBP1-202ENST00000324554 SEC31BQ9NQW1 1179 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 IDH1O75874 414 aaKnown RBP18.7■□□□□ 0.58
USHBP1-202ENST00000324554 POLR3DP05423 398 aaPredicted RBP18.7■□□□□ 0.58
USHBP1-202ENST00000324554 PHKA1P46020 1223 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 UBE3CQ15386 1083 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 CCDC102BQ68D86 513 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 TBC1D10CQ8IV04 446 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 FMR1NBQ8N0W7 255 aaPredicted RBP18.7■□□□□ 0.58
USHBP1-202ENST00000324554 CCDC24Q8N4L8 307 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 NKX2-3Q8TAU0 364 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 GJB4Q9NTQ9 266 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 CLIC4Q9Y696 253 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 THSD7AQ9UPZ6 1657 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 MYO5AQ9Y4I1 1855 aaKnown RBP18.69■□□□□ 0.58
USHBP1-202ENST00000324554 ARID4AP29374 1257 aaPredicted RBP18.69■□□□□ 0.58
USHBP1-202ENST00000324554 MRFAP1L1Q96HT8 127 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 POLR3EQ9NVU0 708 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 BTAF1O14981 1849 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 C4AP0C0L4 1744 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 C4BP0C0L5 1744 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 A0A1W2PQ27 194 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 A0A1W2PQ64 194 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 A0A1W2PQD8 194 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 SNAP23O00161 211 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 TRDNQ13061 729 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 MYSM1Q5VVJ2 828 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 LRRC8AQ8IWT6 810 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 ANKRD7Q92527 254 aa18.69■□□□□ 0.58
USHBP1-202ENST00000324554 ZNF532Q9HCE3 1301 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 TNNT1P13805 278 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 PPP4R3BQ5MIZ7 849 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 BRAPQ7Z569 592 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 ANGEL1Q9UNK9 670 aaKnown RBP18.68■□□□□ 0.58
USHBP1-202ENST00000324554 LRP5O75197 1615 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 A0A1B0GVL5 298 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 KIF28PB7ZC32 967 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 YEATS4O95619 227 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 PDE6AP16499 860 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 STK38Q15208 465 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 CYB5R4Q7L1T6 521 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 KCNG4Q8TDN1 519 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 ANO10Q9NW15 660 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 WWC3Q9ULE0 1092 aa18.68■□□□□ 0.58
USHBP1-202ENST00000324554 TCRBV5S4A2TA0A5A2 114 aa18.67■□□□□ 0.58
USHBP1-202ENST00000324554 BECN2A8MW95 431 aa18.67■□□□□ 0.58
USHBP1-202ENST00000324554 FBXW7Q969H0 707 aa18.67■□□□□ 0.58
USHBP1-202ENST00000324554 PKNOX2Q96KN3 472 aa18.67■□□□□ 0.58
USHBP1-202ENST00000324554 SH2B2O14492 632 aaPredicted RBP18.66■□□□□ 0.58
USHBP1-202ENST00000324554 ONECUT3O60422 494 aaPredicted RBP18.66■□□□□ 0.58
USHBP1-202ENST00000324554 NTSR2O95665 410 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 APPP05067 770 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 NDUFA8P51970 172 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 KIF23Q02241 960 aaPredicted RBP18.66■□□□□ 0.58
USHBP1-202ENST00000324554 PUM3Q15397 648 aaKnown RBP18.66■□□□□ 0.58
USHBP1-202ENST00000324554 TBC1D9BQ66K14 1250 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 ZMYM6O95789 1325 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 UQCRFS1P1P0C7P4 283 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 FGFR2P21802 821 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 SF3A1Q15459 793 aaKnown RBP18.66■□□□□ 0.58
USHBP1-202ENST00000324554 PDCL2Q8N4E4 241 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 LPIN2Q92539 896 aa18.66■□□□□ 0.58
USHBP1-202ENST00000324554 COL5A3P25940 1745 aaPredicted RBP18.66■□□□□ 0.58
USHBP1-202ENST00000324554 USP27XA6NNY8 438 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 SPTLC2O15270 562 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 TPD52L1Q16890 204 aaPredicted RBP18.65■□□□□ 0.58
USHBP1-202ENST00000324554 C3orf67Q6ZVT6 689 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 AOPEPQ8N6M6 819 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 PRDM10Q9NQV6 1147 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 LRRC4BQ9NT99 713 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 SMTNL1A8MU46 457 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 ERFEQ4G0M1 354 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 SMAP1Q8IYB5 467 aaPredicted RBP18.65■□□□□ 0.58
USHBP1-202ENST00000324554 MROH5Q6ZUA9 1318 aa18.65■□□□□ 0.58
USHBP1-202ENST00000324554 METAP2P50579 478 aaKnown RBP eCLIP18.64■□□□□ 0.58
USHBP1-202ENST00000324554 NCBP1Q09161 790 aaKnown RBP18.64■□□□□ 0.58
USHBP1-202ENST00000324554 CEP57L1Q8IYX8 460 aa18.64■□□□□ 0.58
USHBP1-202ENST00000324554 RGS22Q8NE09 1264 aa18.64■□□□□ 0.58
USHBP1-202ENST00000324554 STRBPQ96SI9 672 aaKnown RBP18.64■□□□□ 0.58
USHBP1-202ENST00000324554 SDF4Q9BRK5 362 aa18.64■□□□□ 0.58
USHBP1-202ENST00000324554 ZNF652Q9Y2D9 606 aa18.64■□□□□ 0.58
USHBP1-202ENST00000324554 NEDD4P46934 1319 aa18.64■□□□□ 0.58
USHBP1-202ENST00000324554 ARAP2Q8WZ64 1704 aa18.64■□□□□ 0.57
USHBP1-202ENST00000324554 B4E1Z4 1266 aa18.64■□□□□ 0.57
USHBP1-202ENST00000324554 TRIM37O94972 964 aa18.64■□□□□ 0.57
USHBP1-202ENST00000324554 RBM6P78332 1123 aaKnown RBP18.64■□□□□ 0.57
USHBP1-202ENST00000324554 SYNE3Q6ZMZ3 975 aa18.64■□□□□ 0.57
USHBP1-202ENST00000324554 FILIP1Q7Z7B0 1213 aa18.64■□□□□ 0.57
USHBP1-202ENST00000324554 SENP2Q9HC62 589 aa18.64■□□□□ 0.57
USHBP1-202ENST00000324554 RXRAP19793 462 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 CBX1P83916 185 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 PARP10Q53GL7 1025 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 ANO1Q5XXA6 986 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 APOA5Q6Q788 366 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 AIDAQ96BJ3 306 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 AIFM3Q96NN9 605 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 CNTNAP4Q9C0A0 1308 aa18.63■□□□□ 0.57
USHBP1-202ENST00000324554 GTF2E1P29083 439 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms