RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 USP17L12C9JPN9 530 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 USP17L21D6R901 530 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 LETM1O95202 739 aaPredicted RBP10.68□□□□□ -0.7
PTPRE-202ENST00000306042 USP17L8P0C7I0 530 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 KDM2BQ8NHM5 1336 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 TRIM21P19474 475 aaKnown RBP10.67□□□□□ -0.7
PTPRE-202ENST00000306042 ADORA1P30542 326 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 CALML4Q96GE6 196 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 CALML3P27482 149 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 BRPF1P55201 1214 aaPredicted RBP10.67□□□□□ -0.7
PTPRE-202ENST00000306042 CPXCR1Q8N123 301 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 FAM227BQ96M60 508 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 PRM3Q9NNZ6 103 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 GJB2P29033 226 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 GNA11P29992 359 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 RBM25P49756 843 aaKnown RBP10.67□□□□□ -0.7
PTPRE-202ENST00000306042 ODF2Q5BJF6 829 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 ERMNQ8TAM6 284 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 GPR101Q96P66 508 aaPredicted RBP10.67□□□□□ -0.7
PTPRE-202ENST00000306042 MTFR1LQ9H019 292 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 PDCL3Q9H2J4 239 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 SYCP1Q15431 976 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 EDC3Q96F86 508 aaKnown RBP10.67□□□□□ -0.7
PTPRE-202ENST00000306042 CSRNP1Q96S65 589 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 TNMDQ9H2S6 317 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 RBM28Q9NW13 759 aaKnown RBP10.67□□□□□ -0.7
PTPRE-202ENST00000306042 NEURL4Q96JN8 1562 aa10.67□□□□□ -0.7
PTPRE-202ENST00000306042 PATL2C9JE40 543 aaKnown RBP10.66□□□□□ -0.7
PTPRE-202ENST00000306042 SMC2O95347 1197 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 UBA7P41226 1012 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 AOC3Q16853 763 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 CERKLQ49MI3 558 aaPredicted RBP10.66□□□□□ -0.7
PTPRE-202ENST00000306042 BRDTQ58F21 947 aaPredicted RBP10.66□□□□□ -0.7
PTPRE-202ENST00000306042 GADL1Q6ZQY3 521 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 PODNQ7Z5L7 613 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 CELF1Q92879 486 aaKnown RBP10.66□□□□□ -0.7
PTPRE-202ENST00000306042 CIZ1Q9ULV3 898 aaPredicted RBP10.66□□□□□ -0.7
PTPRE-202ENST00000306042 NRKQ7Z2Y5 1582 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 LIG1P18858 919 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 TFAP4Q01664 338 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 PRR5LQ6MZQ0 368 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 NECAB1Q8N987 351 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 SCAND2PQ9GZW5 306 aaPredicted RBP10.66□□□□□ -0.7
PTPRE-202ENST00000306042 UBA5Q9GZZ9 404 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 CDHR2Q9BYE9 1310 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 ITSN1Q15811 1721 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 IQCA1LA6NCM1 817 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 IGKV5-2P06315 115 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 TMEM87BQ96K49 555 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 ISCA1Q9BUE6 129 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 MYO3BQ8WXR4 1341 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 PLEKHG2Q9H7P9 1386 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 CTDSPL2Q05D32 466 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 CLIP2Q9UDT6 1046 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 UBR1Q8IWV7 1749 aa10.66□□□□□ -0.7
PTPRE-202ENST00000306042 CAVIN1Q6NZI2 390 aaKnown RBP10.65□□□□□ -0.7
PTPRE-202ENST00000306042 PAGR1Q9BTK6 254 aa10.65□□□□□ -0.7
PTPRE-202ENST00000306042 SLC5A4Q9NY91 659 aa10.65□□□□□ -0.7
PTPRE-202ENST00000306042 MINPP1Q9UNW1 487 aa10.65□□□□□ -0.7
PTPRE-202ENST00000306042 ECE2O60344 883 aa10.65□□□□□ -0.7
PTPRE-202ENST00000306042 APOBRQ0VD83 1088 aa10.65□□□□□ -0.7
PTPRE-202ENST00000306042 SP8Q8IXZ3 490 aa10.65□□□□□ -0.7
PTPRE-202ENST00000306042 HAUS7Q99871 368 aa10.65□□□□□ -0.7
PTPRE-202ENST00000306042 RXRAP19793 462 aa10.65□□□□□ -0.7
PTPRE-202ENST00000306042 PTPN12Q05209 780 aaKnown RBP10.65□□□□□ -0.7
PTPRE-202ENST00000306042 TRMT2AQ8IZ69 625 aaKnown RBP10.65□□□□□ -0.7
PTPRE-202ENST00000306042 CAMTA2O94983 1202 aa10.65□□□□□ -0.71
PTPRE-202ENST00000306042 SDR42E1Q8WUS8 393 aa10.65□□□□□ -0.71
PTPRE-202ENST00000306042 IREB2P48200 963 aaKnown RBP10.64□□□□□ -0.71
PTPRE-202ENST00000306042 PPARAQ07869 468 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 ZFYVE27Q5T4F4 411 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 CHURC1Q8WUH1 139 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 DBNLQ9UJU6 430 aaKnown RBP10.64□□□□□ -0.71
PTPRE-202ENST00000306042 TRIM28Q13263 835 aaKnown RBP10.64□□□□□ -0.71
PTPRE-202ENST00000306042 TBC1D10BQ4KMP7 808 aaPredicted RBP10.64□□□□□ -0.71
PTPRE-202ENST00000306042 NSMFQ6X4W1 530 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 USP42Q9H9J4 1324 aaKnown RBP10.64□□□□□ -0.71
PTPRE-202ENST00000306042 NAP1L1P55209 391 aaKnown RBP10.64□□□□□ -0.71
PTPRE-202ENST00000306042 CRAMP1Q96RY5 1269 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 ZNF521Q96K83 1311 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 PTPDC1A2A3K4 754 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 FCHSD1Q86WN1 690 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 PDILTQ8N807 584 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 C2orf69Q8N8R5 385 aa10.64□□□□□ -0.71
PTPRE-202ENST00000306042 GPHNQ9NQX3 736 aaPredicted RBP10.64□□□□□ -0.71
PTPRE-202ENST00000306042 COL5A2P05997 1499 aaPredicted RBP10.63□□□□□ -0.71
PTPRE-202ENST00000306042 KIF20AO95235 890 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 UBE3CQ15386 1083 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 COL23A1Q86Y22 540 aaPredicted RBP10.63□□□□□ -0.71
PTPRE-202ENST00000306042 BMP15O95972 392 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 IDEP14735 1019 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 ICA1Q05084 483 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 ABCB5Q2M3G0 1257 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 FAM47AQ5JRC9 791 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 AKNAD1Q5T1N1 836 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 HOMER2Q9NSB8 354 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 AMPD3Q01432 767 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 SP4Q02446 784 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 IFNL3Q8IZI9 196 aa10.63□□□□□ -0.71
PTPRE-202ENST00000306042 ATP8A2Q9NTI2 1148 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms