RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PRDM11Q9NQV5 511 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 FBXO3Q9UK99 471 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 JRKLQ9Y4A0 524 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 FAM169AQ9Y6X4 670 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 ZNF518AQ6AHZ1 1483 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 ATP8B1O43520 1251 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 SPZ1Q9BXG8 430 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 SEPT10Q9P0V9 454 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 DAAM1Q9Y4D1 1078 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 CHD4Q14839 1912 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 WTAPQ15007 396 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 TMEM67Q5HYA8 995 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 OGFOD1Q8N543 542 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 BZW2Q9Y6E2 419 aaKnown RBP6.79□□□□□ -1.32
VPS13D-201ENST00000011700 KIF24Q5T7B8 1368 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 ADGRL1O94910 1474 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 PPP1R7Q15435 360 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 AFAP1L1Q8TED9 768 aa6.79□□□□□ -1.32
VPS13D-201ENST00000011700 TRIM75PA6NK02 468 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 GOLGA8AA7E2F4 631 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 PRPF6O94906 941 aaKnown RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 NONOQ15233 471 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 IPO11Q9UI26 975 aaKnown RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 PIK3C2GO75747 1445 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 PRG4Q92954 1404 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 NAIPQ13075 1403 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 MAST3O60307 1309 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 SLC4A3P48751 1232 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 TMTC1Q8IUR5 882 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 ZMAT2Q96NC0 199 aaKnown RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 EPB41P11171 864 aaKnown RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 IFIT1BQ5T764 474 aaKnown RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 NPC1L1Q9UHC9 1359 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 ZBTB43O43298 467 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 ST5P78524 1137 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 PAK2Q13177 524 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 BRD3Q15059 726 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 RRAGBQ5VZM2 374 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 ATRIPQ8WXE1 791 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 MYL1P05976 194 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 ITIH3Q06033 890 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 NOLC1Q14978 699 aaKnown RBP eCLIP6.78□□□□□ -1.324e-7■■■■■ 35.6
VPS13D-201ENST00000011700 ARHGAP6O43182 974 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 RBBP5Q15291 538 aaKnown RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 WDR44Q5JSH3 913 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 EXOC8Q8IYI6 725 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 CCDC68Q9H2F9 335 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 MYH1P12882 1939 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 MYH2Q9UKX2 1941 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 MYH4Q9Y623 1939 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 PDE4DIPQ5VU43 2346 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 N4BP1O75113 896 aaKnown RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 SEMA3FQ13275 785 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 ESCO1Q5FWF5 840 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 C10orf76Q5T2E6 689 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 KIRREL3Q8IZU9 778 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 CALUO43852 315 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 LMNB1P20700 586 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 PDZD4Q76G19 769 aaPredicted RBP6.78□□□□□ -1.32
VPS13D-201ENST00000011700 TRIM58Q8NG06 486 aa6.78□□□□□ -1.32
VPS13D-201ENST00000011700 LAMC1P11047 1609 aa6.77□□□□□ -1.32
VPS13D-201ENST00000011700 KRT3P12035 628 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 NSMCE1Q8WV22 266 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 OPTNQ96CV9 577 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 ORC6Q9Y5N6 252 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 IPO5O00410 1097 aaKnown RBP6.77□□□□□ -1.33
VPS13D-201ENST00000011700 NFKBIAP25963 317 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 PPP2R3AQ06190 1150 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 GSDMBQ8TAX9 411 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 PRAM1Q96QH2 718 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 SYNMO15061 1565 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 DENND2CQ68D51 928 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 IFT122Q9HBG6 1241 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 MYH7BA7E2Y1 1941 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 KDM3AQ9Y4C1 1321 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 ALDH1L1O75891 902 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 ZNF804AQ7Z570 1209 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 MPNDQ8N594 471 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.77□□□□□ -1.33
VPS13D-201ENST00000011700 PHACTR2O75167 634 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 PCK1P35558 622 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 RARSP54136 660 aaKnown RBP6.77□□□□□ -1.33
VPS13D-201ENST00000011700 RTN1Q16799 776 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 RNF14Q9UBS8 474 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 CRCPO75575 148 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 SLC9C1Q4G0N8 1177 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 GALNT17Q6IS24 598 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 DTHD1Q6ZMT9 781 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 CSRNP1Q96S65 589 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 HOXB7P09629 217 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 ASPHQ12797 758 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 ZSCAN23Q3MJ62 389 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 TXNDC2Q86VQ3 553 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 RRP36Q96EU6 259 aaKnown RBP6.77□□□□□ -1.33
VPS13D-201ENST00000011700 BEGAINQ9BUH8 593 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 NT5C3AQ9H0P0 336 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 MRPL40Q9NQ50 206 aaKnown RBP6.77□□□□□ -1.33
VPS13D-201ENST00000011700 ABCF2Q9UG63 623 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 IL15P40933 162 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-201ENST00000011700 NUCB1Q02818 461 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms