RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 MPDZO75970 2070 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 IGKV1D-42A0A075B6H8 117 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 ODAMA1E959 279 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 RPL7P18124 248 aaKnown RBP2.84□□□□□ -1.95
SCFD1-208ENST00000553278 ARPP19P56211 112 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 EIF3IQ13347 325 aaKnown RBP2.84□□□□□ -1.95
SCFD1-208ENST00000553278 MSMO1Q15800 293 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 C3orf56Q8N813 242 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 ZNF714Q96N38 554 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 OR2H1Q9GZK4 316 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 OTORQ9NRC9 128 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 NAT8BQ9UHF3 227 aa2.84□□□□□ -1.95
SCFD1-208ENST00000553278 ARHGEF28Q8N1W1 1705 aaKnown RBP2.84□□□□□ -1.96
SCFD1-208ENST00000553278 A8MWV9 139 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 GABARAPH6UMI1 98 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 H7BYZ3 331 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 J3KT08 172 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 TIMM17BO60830 172 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 IFNA4P05014 189 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 KRTAP10-8P60410 259 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 RPS28P62857 69 aaKnown RBP2.83□□□□□ -1.96
SCFD1-208ENST00000553278 SMCO1Q147U7 214 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 TPRXLQ17RH7 258 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 ESRGQ1W209 222 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 C7orf65Q6ZTY9 151 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 LZICQ8WZA0 190 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 TXNDC17Q9BRA2 123 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 TTTY12Q9BZ98 90 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 TCEAL2Q9H3H9 227 aaPredicted RBP2.83□□□□□ -1.96
SCFD1-208ENST00000553278 TRAPPC2LQ9UL33 140 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 LHFPL6Q9Y693 200 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 EML6Q6ZMW3 1958 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 CEP164Q9UPV0 1460 aa2.83□□□□□ -1.96
SCFD1-208ENST00000553278 ZFHX2Q9C0A1 2572 aaPredicted RBP2.82□□□□□ -1.96
SCFD1-208ENST00000553278 MEIKINA0A087WXM9 373 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 ARPC5O15511 151 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 HIST1H2BKO60814 126 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 HIST1H2BJP06899 126 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 BAALC-AS2P0C853 105 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 UBBP0CG47 229 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 MGST1P10620 155 aaKnown RBP2.82□□□□□ -1.96
SCFD1-208ENST00000553278 HBBP68871 147 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 SLC50A1Q9BRV3 221 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 RNF11Q9Y3C5 154 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 ARHGEF10O15013 1369 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 BCL9O00512 1426 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 SMARCA4P51532 1647 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 COL4A2P08572 1712 aa2.82□□□□□ -1.96
SCFD1-208ENST00000553278 OVOL1O14753 267 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 DEGS1O15121 323 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 ZNF737O75373 536 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 PROSCO94903 275 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 DHFRP00374 187 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 C1QCP02747 245 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 RPS3P23396 243 aaKnown RBP eCLIP2.81□□□□□ -1.96
SCFD1-208ENST00000553278 RPL35P42766 123 aaKnown RBP2.81□□□□□ -1.96
SCFD1-208ENST00000553278 NDUFA6P56556 154 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 ELOBQ15370 118 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 HRCT1Q6UXD1 115 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 PHF5AQ7RTV0 110 aaKnown RBP2.81□□□□□ -1.96
SCFD1-208ENST00000553278 OR5D16Q8NGK9 328 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 JPT1Q9UK76 154 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 NCKAP5O14513 1909 aa2.81□□□□□ -1.96
SCFD1-208ENST00000553278 CCDC88CQ9P219 2028 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 SCN8AQ9UQD0 1980 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 SBF1O95248 1867 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 PXDNLA1KZ92 1463 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 TRAV1-1A0A0B4J248 108 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 J3QRE1 110 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 LYZL6O75951 148 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 ZNF705BP0CI00 300 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-208ENST00000553278 MIFP14174 115 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 CCDC153Q494R4 210 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 C9orf163Q8N9P6 203 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 TMEM229BQ8NBD8 167 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 OR4K15Q8NH41 348 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 CACYBPQ9HB71 228 aaKnown RBP2.8□□□□□ -1.96
SCFD1-208ENST00000553278 GSKIPQ9P0R6 139 aa2.8□□□□□ -1.96
SCFD1-208ENST00000553278 ARAP1Q96P48 1450 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 TRAPPC8Q9Y2L5 1435 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 BORCS7-ASMTA0A0B4J1R7 106 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 TRAV3A0A0B4J244 114 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 A0A1B0GX51 115 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 P0DMU3 169 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 FAM231AP0DMU4 169 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 FAM231CP0DMU5 169 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 FABP2P12104 132 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 SDC2P34741 201 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 NUMA1Q14980 2115 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 LINC00301Q8NCQ3 95 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 ZNF418Q8TF45 676 aaPredicted RBP2.79□□□□□ -1.96
SCFD1-208ENST00000553278 LXNQ9BS40 222 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 C14orf132Q9NPU4 83 aa2.79□□□□□ -1.96
SCFD1-208ENST00000553278 NUP210Q8TEM1 1887 aaPredicted RBP2.78□□□□□ -1.96
SCFD1-208ENST00000553278 NUP98P52948 1817 aa2.78□□□□□ -1.96
SCFD1-208ENST00000553278 TRAV36DV7A0A075B6V5 113 aa2.78□□□□□ -1.96
SCFD1-208ENST00000553278 A0A087WX48 190 aa2.78□□□□□ -1.96
SCFD1-208ENST00000553278 K7ERJ3 54 aa2.78□□□□□ -1.96
SCFD1-208ENST00000553278 RER1O15258 196 aa2.78□□□□□ -1.96
SCFD1-208ENST00000553278 ZNF846Q147U1 533 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms