RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 MLST8Q9BVC4 326 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 TP53TG3Q9ULZ0 132 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 RPH3ALQ9UNE2 315 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 SPINK4O60575 86 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 CRISP2P16562 243 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 NDPQ00604 133 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 TTC9CQ8N5M4 171 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 NUDT10Q8NFP7 164 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 NUDT11Q96G61 164 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 GRAMD2BQ96HH9 432 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 FANCD2OSQ96PS1 177 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 OTORQ9NRC9 128 aa13.16□□□□□ -0.3
CCDC43-202ENST00000457422 TRAV30A0A087WSZ9 112 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 GRIFINA4D1Z8 144 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 H3BRN7 92 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 CA1P00915 261 aaPredicted RBP13.15□□□□□ -0.3
CCDC43-202ENST00000457422 TCRAP04437 139 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 AMY1AP04745 511 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 Q0VG73 95 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 RASL11AQ6T310 242 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 FAM168AQ92567 244 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 SHANK2-AS3Q9BTD1 123 aa13.15□□□□□ -0.3
CCDC43-202ENST00000457422 NCBP2LA6PVI3 153 aaKnown RBP13.14□□□□□ -0.31
CCDC43-202ENST00000457422 NUPR1O60356 82 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 SLC35B1P78383 322 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 ZNF491Q8N8L2 437 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 ZNF586Q9NXT0 402 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 NAT8BQ9UHF3 227 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 S4R3C0 116 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 WI2-2373I1.2A0A1W2PRP0 233 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 LTAP01374 205 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 HLA-DQA1P01909 254 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 UBE2E1P51965 193 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 CMTM2Q8TAZ6 248 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 WIPF2Q8TF74 440 aaPredicted RBP13.14□□□□□ -0.31
CCDC43-202ENST00000457422 RNF125Q96EQ8 232 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 SGK494Q96LW2 274 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 RNF24Q9Y225 148 aa13.14□□□□□ -0.31
CCDC43-202ENST00000457422 TOX4O94842 621 aa13.13□□□□□ -0.31
CCDC43-202ENST00000457422 TMEM11P17152 192 aa13.13□□□□□ -0.31
CCDC43-202ENST00000457422 LINC00310P59036 64 aa13.13□□□□□ -0.31
CCDC43-202ENST00000457422 LMO4P61968 165 aa13.13□□□□□ -0.31
CCDC43-202ENST00000457422 BPIFA4PQ86YQ2 179 aa13.13□□□□□ -0.31
CCDC43-202ENST00000457422 TBX15Q96SF7 602 aa13.13□□□□□ -0.31
CCDC43-202ENST00000457422 BPESC1Q9GZL8 116 aa13.13□□□□□ -0.31
CCDC43-202ENST00000457422 OVOL3O00110 214 aa13.12□□□□□ -0.31
CCDC43-202ENST00000457422 PKIAP61925 76 aa13.12□□□□□ -0.31
CCDC43-202ENST00000457422 PRR27Q6MZM9 219 aa13.12□□□□□ -0.31
CCDC43-202ENST00000457422 TSKUQ8WUA8 353 aa13.12□□□□□ -0.31
CCDC43-202ENST00000457422 MFAP4P55083 255 aa13.12□□□□□ -0.31
CCDC43-202ENST00000457422 USF2Q15853 346 aaPredicted RBP13.12□□□□□ -0.31
CCDC43-202ENST00000457422 MRPL54Q6P161 138 aaKnown RBP13.12□□□□□ -0.31
CCDC43-202ENST00000457422 ZNF492Q9P255 531 aa13.12□□□□□ -0.31
CCDC43-202ENST00000457422 PKD1L2Q7Z442 2459 aa13.12□□□□□ -0.31
CCDC43-202ENST00000457422 WNK2Q9Y3S1 2297 aa13.12□□□□□ -0.31
CCDC43-202ENST00000457422 F8W735 103 aaPredicted RBP13.11□□□□□ -0.31
CCDC43-202ENST00000457422 GNG7O60262 68 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 IL4P05112 153 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 IGLC2P0DOY2 106 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 PAFAH1B2P68402 229 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 CT83Q5H943 113 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 AJUBAQ96IF1 538 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 C1RLQ9NZP8 487 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 THYN1Q9P016 225 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 TRBV19A0A075B6N1 114 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 IGHV7-81A0A0B4J1V7 117 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 TRBV6-1A0A0K0K1D8 114 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 PAX1P15863 534 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 OR10J3Q5JRS4 329 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 S100A7AQ86SG5 101 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 LYPD1Q8N2G4 141 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 NUP35Q8NFH5 326 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 OR4F17Q8NGA8 305 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 PRSS22Q9GZN4 317 aa13.11□□□□□ -0.31
CCDC43-202ENST00000457422 ZNF331Q9NQX6 463 aaPredicted RBP13.11□□□□□ -0.31
CCDC43-202ENST00000457422 TRAV20A0A0B4J274 112 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 C19orf71A6NCJ1 209 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 TSTD3H0UI37 97 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 MRPS12O15235 138 aaKnown RBP13.1□□□□□ -0.31
CCDC43-202ENST00000457422 SERF1AO75920 110 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 HLA-DRB1P01911 266 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 FAM106CPP0CH98 169 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 IQCJQ1A5X6 159 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 C9orf152Q5JTZ5 239 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 FAM120AOSQ5T036 256 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 Q8N9W7 124 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 MED13LQ71F56 2210 aa13.1□□□□□ -0.31
CCDC43-202ENST00000457422 EGR2P11161 476 aaPredicted RBP13.09□□□□□ -0.31
CCDC43-202ENST00000457422 TPPP2P59282 170 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 RAB4BP61018 213 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 Q86TA4 180 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 NEU1Q99519 415 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 LPAR2Q9HBW0 351 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 C21orf62Q9NYP8 219 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 BMPR1BO00238 502 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 ATP5L2Q7Z4Y8 100 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 BAGE3Q86Y29 109 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 EXOC3-AS1Q8N2X6 119 aa13.09□□□□□ -0.31
CCDC43-202ENST00000457422 RPP21Q9H633 154 aaKnown RBP13.09□□□□□ -0.31
CCDC43-202ENST00000457422 GNB4Q9HAV0 340 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms