RNA–Protein interactions for RNA: ENST00000384344.1

RNU6-39P-201, Transcript of RNA, U6 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU6-39P, Length 107 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-39P-201ENST00000384344 CDKL4Q5MAI5 379 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 SPATA8Q6RVD6 105 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 C3orf56Q8N813 242 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 TSPAN32Q96QS1 320 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 CMSS1Q9BQ75 279 aaKnown RBP0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 CYSLTR1Q9Y271 337 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 PKIGQ9Y2B9 76 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 ADGRB2O60241 1585 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 BCL9LQ86UU0 1499 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 ARAP1Q96P48 1450 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 USP34Q70CQ2 3546 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 FREM2Q5SZK8 3169 aa0.47□□□□□ -2.33
RNU6-39P-201ENST00000384344 PIK3C2AO00443 1686 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 TGIF2-C20orf24A0A0A6YYL0 155 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 J3QRK9 145 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 IFNA16P05015 189 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 OR4E1P0C645 316 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 SMIM10L2AP0DMW4 78 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 SMIM10L2BP0DMW5 78 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 ANP32AP39687 249 aaKnown RBP0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 NKX2-5P52952 324 aaPredicted RBP0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 GKN2Q86XP6 184 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 CLECL1Q8IZS7 167 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 TMEM70Q9BUB7 260 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 DCSTAMPQ9H295 470 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 SRRM2Q9UQ35 2752 aaKnown RBP0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 COL4A5P29400 1685 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 NBASA2RRP1 2371 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 CCDC88AQ3V6T2 1871 aa0.46□□□□□ -2.34
RNU6-39P-201ENST00000384344 MYO3BQ8WXR4 1341 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 A0A087X0T9 212 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 TRAV26-2A0A0B4J265 109 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 AHSA1O95433 338 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 DNAL4O96015 105 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 AP3S2P59780 193 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 RPS20P60866 119 aaKnown RBP0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 SRSF6Q13247 344 aaKnown RBP0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 ESRGQ1W209 222 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 BRMS1LQ5PSV4 323 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 KRTAP19-3Q7Z4W3 81 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 OR6V1Q8N148 313 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 LINC00301Q8NCQ3 95 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 DDI1Q8WTU0 396 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 BORCS7Q96B45 105 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 C2orf50Q96LR7 162 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 OR51V1Q9H2C8 321 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 C14orf132Q9NPU4 83 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 MRPL27Q9P0M9 148 aaKnown RBP0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 TMEM14CQ9P0S9 112 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 V9GYY5 206 aaPredicted RBP0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 VPS13AQ96RL7 3174 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 ERCC6Q03468 1493 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 LAMA4Q16363 1823 aa0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 RBBP6Q7Z6E9 1792 aaKnown RBP0.45□□□□□ -2.34
RNU6-39P-201ENST00000384344 ZCCHC6Q5VYS8 1495 aaKnown RBP0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 CDK12Q9NYV4 1490 aaPredicted RBP0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 TRAV3A0A0B4J244 114 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 CHP2O43745 196 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 TTRP02766 147 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 OMPP47874 163 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 RHOBP62745 196 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 PSG9Q00887 426 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 LINC01554Q52M75 96 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 HIST1H2BLQ99880 126 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 NESP48681 1621 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 LOC400499M0QZD8 3231 aa0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 YTHDC2Q9H6S0 1430 aaKnown RBP0.44□□□□□ -2.34
RNU6-39P-201ENST00000384344 DNAH14Q0VDD8 3507 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 OR2J2O76002 312 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 SERPINA6P08185 405 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 DEFA1P59665 94 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 TSNQ15631 228 aaKnown RBP0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 LCA10Q71F78 164 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 OR8D4Q8NGM9 314 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 OR2T10Q8NGZ9 312 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 TMEM254Q8TBM7 123 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 CT55Q8WUE5 264 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 C8orf76Q96K31 380 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 UTP11Q9Y3A2 253 aaKnown RBP0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 MGAQ8IWI9 3026 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 WRNQ14191 1432 aaPredicted RBP eCLIP0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 GOLGB1Q14789 3259 aaKnown RBP0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 MYO15AQ9UKN7 3530 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 EML6Q6ZMW3 1958 aa0.43□□□□□ -2.34
RNU6-39P-201ENST00000384344 F8P00451 2351 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 CHD9Q3L8U1 2897 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 CLDN24A6NM45 220 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 CCL25O15444 150 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 PPIBP23284 216 aaKnown RBP0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 DEFB113Q30KQ7 82 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 C2orf82Q6UX34 121 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 LINC00322Q6ZN03 302 aaPredicted RBP0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 CLDN22Q8N7P3 220 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 FAM172AQ8WUF8 416 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 TOP2BQ02880 1626 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 CDH23Q9H251 3354 aa0.42□□□□□ -2.34
RNU6-39P-201ENST00000384344 SHANK2Q9UPX8 1470 aa0.41□□□□□ -2.34
RNU6-39P-201ENST00000384344 SVEP1Q4LDE5 3571 aa0.41□□□□□ -2.34
RNU6-39P-201ENST00000384344 OR2T8A6NH00 312 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms