RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ATP6V0BQ99437 205 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 DENND4AQ7Z401 1863 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 CACNA1HO95180 2353 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 ZNF561-AS1K7EIQ3 104 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 OCC1Q8TAD7 63 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 WNK1Q9H4A3 2382 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 ZNF876PQ49A33 203 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 IGHG4P01861 327 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 LILRA6Q6PI73 481 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 C1orf43Q9BWL3 253 aa9.69□□□□□ -0.86
VPS13A-205ENST00000376636 TANC2Q9HCD6 1990 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 CRIM1Q9NZV1 1036 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 IGHV3-11P01762 117 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 MPV17L2Q567V2 206 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 PRR19A6NJB7 356 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 CRYBA2P53672 197 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 LINC00477Q96M19 166 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 TRBV7-1A0A0A6YYK4 115 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 PRCDQ00LT1 54 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 CHKB-CPT1BH3BT56 60 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 MPZP25189 248 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 C1orf159Q96HA4 380 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 CSTL1Q9H114 145 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 THAP8Q8NA92 274 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 SPSB3Q6PJ21 355 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 ZNF497Q6ZNH5 498 aa9.68□□□□□ -0.86
VPS13A-205ENST00000376636 A0A1B0GW64 132 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 TMEM133Q9H2Q1 129 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 TRAV1-1A0A0B4J248 108 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 SRRM4A7MD48 611 aaKnown RBP9.67□□□□□ -0.86
VPS13A-205ENST00000376636 F8VVB4 439 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 F8VWA3 439 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 ZNF138P52744 262 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 C5orf47Q569G3 176 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 TMEM52Q8NDY8 209 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 C1QTNF5Q9BXJ0 243 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 OBSL1O75147 1896 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 GFRA4Q9GZZ7 299 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 GATA2P23769 480 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-205ENST00000376636 IGFBP6P24592 240 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-205ENST00000376636 SPXQ9BT56 116 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 PYYP10082 97 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 COX6A1P12074 109 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 LIMS2Q7Z4I7 341 aa9.67□□□□□ -0.86
VPS13A-205ENST00000376636 HAMPP81172 84 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 A0A0G2JK05 382 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 C9orf50Q5SZB4 431 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 TRBV6-7A0A0A0MS04 114 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 SPAARA0A1B0GVQ0 90 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 NDUFS5O43920 106 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 RNF222A6NCQ9 220 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 CEACAM1P13688 526 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 STPG1Q5TH74 334 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 MED12LQ86YW9 2145 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 SLC25A28Q96A46 364 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 AGMATQ9BSE5 352 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 hDV102S1A0JD36 115 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.66□□□□□ -0.86
VPS13A-205ENST00000376636 PIN1P1O15428 100 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 RPP25Q9BUL9 199 aaKnown RBP9.66□□□□□ -0.86
VPS13A-205ENST00000376636 LYPD1Q8N2G4 141 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 NAA38Q9BRA0 125 aaKnown RBP9.66□□□□□ -0.86
VPS13A-205ENST00000376636 LY96Q9Y6Y9 160 aa9.66□□□□□ -0.86
VPS13A-205ENST00000376636 IGHV3-73A0A0B4J1V6 119 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 MORN2Q502X0 79 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 IGHV2OR16-5A0A0B4J2B6 119 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 WNT2P09544 360 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 PPIFP30405 207 aaKnown RBP9.65□□□□□ -0.86
VPS13A-205ENST00000376636 NUP35Q8NFH5 326 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 ADAMTSL1Q8N6G6 1762 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 SMRP1Q8NCR6 262 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 TMEM141Q96I45 108 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 LINC00271P0C7V0 271 aa9.65□□□□□ -0.86
VPS13A-205ENST00000376636 GREB1LQ9C091 1923 aaPredicted RBP9.65□□□□□ -0.86
VPS13A-205ENST00000376636 CELA2AP08217 269 aa9.65□□□□□ -0.87
VPS13A-205ENST00000376636 C15orf32Q32M92 178 aa9.65□□□□□ -0.87
VPS13A-205ENST00000376636 TMEM158Q8WZ71 300 aa9.65□□□□□ -0.87
VPS13A-205ENST00000376636 MBNL3Q9NUK0 354 aaKnown RBP9.65□□□□□ -0.87
VPS13A-205ENST00000376636 IGKV1-8A0A0C4DH67 115 aa9.65□□□□□ -0.87
VPS13A-205ENST00000376636 SCRT1Q9BWW7 348 aa9.65□□□□□ -0.87
VPS13A-205ENST00000376636 SHANK3Q9BYB0 1731 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 TMEM131Q92545 1883 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 SAP30O75446 220 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 CECR9P0C854 216 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 TRAV13-2A0A0B4J235 113 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 ZNF474Q6S9Z5 364 aaPredicted RBP9.64□□□□□ -0.87
VPS13A-205ENST00000376636 PKIGQ9Y2B9 76 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 CRLF1O75462 422 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 DEPPQ9NTK1 212 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 BOD1L2Q8IYS8 172 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 IGKV2-40A0A087WW87 121 aaPredicted RBP9.64□□□□□ -0.87
VPS13A-205ENST00000376636 TRAV13-1A0A0B4J241 112 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 IGKV2D-40P01614 121 aaPredicted RBP9.64□□□□□ -0.87
VPS13A-205ENST00000376636 TRGV9Q99603 122 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 TRPT1Q86TN4 253 aaKnown RBP9.64□□□□□ -0.87
VPS13A-205ENST00000376636 DMRTC2Q8IXT2 367 aaPredicted RBP9.64□□□□□ -0.87
VPS13A-205ENST00000376636 CLPSL1A2RUU4 121 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 PMS2P5A8MQ11 134 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 EREGO14944 169 aa9.64□□□□□ -0.87
VPS13A-205ENST00000376636 ATRAIDQ6UW56 229 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms