RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 DEDDO75618 318 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 SCRG1O75711 98 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 TCRAP04437 139 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 SLC25A5P05141 298 aaKnown RBP1.68□□□□□ -2.14
CD44-216ENST00000525293 SEC11BP0C7V7 166 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 SLC25A4P12235 298 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 CTSEP14091 401 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 SNCAP37840 140 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 C1QTNF8P60827 252 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 DAD1P61803 113 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 RPS23P62266 143 aaKnown RBP1.68□□□□□ -2.14
CD44-216ENST00000525293 ZNF90Q03938 601 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 REG3AQ06141 175 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 Q0VG73 95 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 CST6Q15828 149 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 ZNF79Q15937 498 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 RTL8BQ17RB0 113 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 SPATA45Q537H7 98 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 BVES-AS1Q5T3Y7 98 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 FAM219BQ5XKK7 198 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 CLEC19AQ6UXS0 136 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 H2AFVQ71UI9 128 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 AAED1Q7RTV5 226 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 HMGN2P46Q86SG4 172 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 RPS19BP1Q86WX3 136 aaKnown RBP1.68□□□□□ -2.14
CD44-216ENST00000525293 PRR15Q8IV56 129 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 ZNF709Q8N972 641 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 ZIC4Q8N9L1 334 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 C11orf72Q8NBR9 251 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 OR4B1Q8NGF8 309 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 OR4X2Q8NGF9 303 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 OR5C1Q8NGR4 320 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 OR1J4Q8NGS1 313 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 OR2T10Q8NGZ9 312 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 OR52P1PQ8NH57 321 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 RFESDQ8TAC1 157 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 FLVCR1-AS1Q8TAF5 88 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 STAG3L4Q8TBR4 150 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 C10orf105Q8TEF2 133 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 TWIST2Q8WVJ9 160 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 MUCL1Q96DR8 90 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 S100A16Q96FQ6 103 aaKnown RBP1.68□□□□□ -2.14
CD44-216ENST00000525293 LINC00526Q96FQ7 95 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 RNF185Q96GF1 192 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 NMNAT3Q96T66 252 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 RNF126Q9BV68 326 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 RTL8AQ9BWD3 113 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 MRPL20Q9BYC9 149 aaKnown RBP1.68□□□□□ -2.14
CD44-216ENST00000525293 AGPAT4-IT1Q9H0P7 198 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 DUSP21Q9H596 190 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 TMEM106BQ9NUM4 274 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 MARCH5Q9NX47 278 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 CALYQ9NYX4 217 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 MPC1Q9Y5U8 109 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 HEBP2Q9Y5Z4 205 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 F11RQ9Y624 299 aaKnown RBP1.68□□□□□ -2.14
CD44-216ENST00000525293 CHCHD2Q9Y6H1 151 aaPredicted RBP1.68□□□□□ -2.14
CD44-216ENST00000525293 CUL9Q8IWT3 2517 aa1.68□□□□□ -2.14
CD44-216ENST00000525293 DCCP43146 1447 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 ANKRD26Q9UPS8 1709 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 TRAV9-2A0A087WT02 112 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 TRAV8-3A0A0A6YYJ7 113 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 TRAV13-1A0A0B4J241 112 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 IGKV1-8A0A0C4DH67 115 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 RBAKDNA6NC62 111 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 MEIS3P1A6NDR6 274 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 A8MUN3 132 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 C9JQL5 133 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 TMEM262E9PQX1 116 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 H3BRM9 83 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 M0R378 163 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 M0R381 172 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 LST1O00453 97 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 ZNF73O43830 326 aaPredicted RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 DUSP14O95147 198 aaKnown RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 APOMO95445 188 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 NAPSAO96009 420 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 PTHP01270 115 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 HLA-DQB1P01920 261 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 CD3DP04234 171 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 GIG44P09565 113 aaPredicted RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 SFTA3P0C7M3 94 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 LINC00869P0C866 280 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 ZNF286BP0CG31 522 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 FABP2P12104 132 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 TPT1P13693 172 aaKnown RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 PSMB3P49720 205 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 POLR2JP52435 117 aaKnown RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 LINC00313P59037 77 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 TAS2R45P59539 299 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 TMEM258P61165 79 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 PRR3P79522 188 aaKnown RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 ERCC8Q13216 396 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 EBI3Q14213 229 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 WFDC2Q14508 124 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 HMGN3Q15651 99 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 CCL14Q16627 93 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 RRN3P1Q2M238 152 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 SPRNQ5BIV9 151 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 PAGE3Q5JUK9 113 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms