RNA–Protein interactions for RNA: ENST00000486427.1

LTN1-206, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 2

Gene LTN1, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-206ENST00000486427 NCOA1Q15788 1441 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 AHNAKQ09666 5890 aaKnown RBP0.67□□□□□ -2.3
LTN1-206ENST00000486427 TRBV6-8A0A0A6YYG3 113 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 hADV38S2A0JD32 116 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 SMIM9A6NGZ8 99 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 INE1O15225 51 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 RPS17P08708 135 aaKnown RBP0.67□□□□□ -2.3
LTN1-206ENST00000486427 OR4E1P0C645 316 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 S100A4P26447 101 aaKnown RBP0.67□□□□□ -2.3
LTN1-206ENST00000486427 YPEL3P61236 119 aaPredicted RBP0.67□□□□□ -2.3
LTN1-206ENST00000486427 DEFB113Q30KQ7 82 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 KRT222Q8N1A0 295 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 GDPD1Q8N9F7 314 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 CT55Q8WUE5 264 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 ADAT3Q96EY9 351 aaPredicted RBP0.67□□□□□ -2.3
LTN1-206ENST00000486427 CCDC90BQ9GZT6 254 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 RNF122Q9H9V4 155 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.67□□□□□ -2.3
LTN1-206ENST00000486427 NHP2Q9NX24 153 aaKnown RBP0.67□□□□□ -2.3
LTN1-206ENST00000486427 EPDR1Q9UM22 224 aa0.67□□□□□ -2.3
LTN1-206ENST00000486427 SULT1B1O43704 296 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 RPP14O95059 124 aaKnown RBP0.66□□□□□ -2.3
LTN1-206ENST00000486427 TCRBP04435 133 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 CEBPGP53567 150 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 AESQ08117 197 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 EDDM3AQ14507 147 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 RGS21Q2M5E4 152 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 C1orf137Q5JT78 98 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 C3orf56Q8N813 242 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 C2orf50Q96LR7 162 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 SLC35A3Q9Y2D2 325 aa0.66□□□□□ -2.3
LTN1-206ENST00000486427 EML6Q6ZMW3 1958 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 A0A087X0T9 212 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 TRAV3A0A0B4J244 114 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 C7orf71A4D174 169 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 PROSCO94903 275 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 CASP1P29466 404 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 HIST1H3AP68431 136 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 H3F3AP84243 136 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 TSNQ15631 228 aaKnown RBP0.65□□□□□ -2.31
LTN1-206ENST00000486427 GDF5OSQ5U4N7 250 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 WFDC5Q8TCV5 224 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 RNASE7Q9H1E1 156 aaKnown RBP0.65□□□□□ -2.31
LTN1-206ENST00000486427 OR51V1Q9H2C8 321 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 C14orf105Q9NVL8 296 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 IDI2-AS1Q9NZ38 188 aa0.65□□□□□ -2.31
LTN1-206ENST00000486427 V9GYY5 206 aaPredicted RBP0.65□□□□□ -2.31
LTN1-206ENST00000486427 MUC5BQ9HC84 5762 aaPredicted RBP0.65□□□□□ -2.31
LTN1-206ENST00000486427 ZFYVE9O95405 1425 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 CEP192Q8TEP8 1941 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.64□□□□□ -2.31
LTN1-206ENST00000486427 hCG_1818297A0A087WSY0 165 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 A8MT66 165 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 HAND1O96004 215 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 ITGB3BPQ13352 177 aaPredicted RBP0.64□□□□□ -2.31
LTN1-206ENST00000486427 BRMS1LQ5PSV4 323 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 LCA10Q71F78 164 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 HIST1H2BLQ99880 126 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 TRIM4Q9C037 500 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 TMEM133Q9H2Q1 129 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 RASL12Q9NYN1 266 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 UBAP1Q9NZ09 502 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 PRELID3BQ9Y3B1 194 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 MCM3APO60318 1980 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 PLXND1Q9Y4D7 1925 aa0.64□□□□□ -2.31
LTN1-206ENST00000486427 ZNF736B4DX44 427 aaPredicted RBP0.63□□□□□ -2.31
LTN1-206ENST00000486427 SERPINE1P05121 402 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 C8GP07360 202 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 PPIBP23284 216 aaKnown RBP0.63□□□□□ -2.31
LTN1-206ENST00000486427 ESRGQ1W209 222 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 TMEM97Q5BJF2 176 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 SOSTDC1Q6X4U4 206 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 OR52L1Q8NGH7 329 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 ACER3Q9NUN7 267 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 UQCC1Q9NVA1 299 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 DENND4CQ5VZ89 1909 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 CCDC144AA2RUR9 1427 aa0.63□□□□□ -2.31
LTN1-206ENST00000486427 TNRC6AQ8NDV7 1962 aaKnown RBP0.63□□□□□ -2.31
LTN1-206ENST00000486427 LAMA4Q16363 1823 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 RTL1A6NKG5 1358 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 PDE6DO43924 150 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 AP3S2P59780 193 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 MYL6P60660 151 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 SRSF6Q13247 344 aaKnown RBP0.62□□□□□ -2.31
LTN1-206ENST00000486427 Q6Q795 121 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 LINC00301Q8NCQ3 95 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 OR51A2Q8NGJ7 313 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 OR8D4Q8NGM9 314 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 SLC25A40Q8TBP6 338 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 GLTPQ9NZD2 209 aa0.62□□□□□ -2.31
LTN1-206ENST00000486427 SMIM17P0DL12 118 aa0.61□□□□□ -2.31
LTN1-206ENST00000486427 SRIP30626 198 aa0.61□□□□□ -2.31
LTN1-206ENST00000486427 RNASE4P34096 147 aaKnown RBP0.61□□□□□ -2.31
LTN1-206ENST00000486427 CDKN2CP42773 168 aa0.61□□□□□ -2.31
LTN1-206ENST00000486427 CCL7P80098 99 aa0.61□□□□□ -2.31
LTN1-206ENST00000486427 MPV17LQ2QL34 196 aa0.61□□□□□ -2.31
LTN1-206ENST00000486427 TEX47Q8TBZ9 253 aa0.61□□□□□ -2.31
LTN1-206ENST00000486427 C4orf3Q8WVX3 66 aa0.61□□□□□ -2.31
LTN1-206ENST00000486427 ITFG2Q969R8 447 aa0.61□□□□□ -2.31
LTN1-206ENST00000486427 PRAP1Q96NZ9 151 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms