RNA–Protein interactions for RNA: ENST00000486427.1

LTN1-206, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 2

Gene LTN1, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-206ENST00000486427 AEBP2Q6ZN18 517 aaPredicted RBP30.6■■■□□ 2.49
LTN1-206ENST00000486427 CHIC1Q5VXU3 224 aa29.74■■■□□ 2.35
LTN1-206ENST00000486427 PHF23Q9BUL5 403 aaPredicted RBP26.21■■□□□ 1.79
LTN1-206ENST00000486427 SENP3Q9H4L4 574 aaPredicted RBP25.87■■□□□ 1.73
LTN1-206ENST00000486427 FOXD1Q16676 465 aa24.09■■□□□ 1.45
LTN1-206ENST00000486427 PLPPR3Q6T4P5 718 aa24.07■■□□□ 1.44
LTN1-206ENST00000486427 PPP6R1Q9UPN7 881 aa23.15■■□□□ 1.3
LTN1-206ENST00000486427 ADRA2BP18089 450 aa23.11■■□□□ 1.29
LTN1-206ENST00000486427 PIAS4Q8N2W9 510 aaPredicted RBP22.66■■□□□ 1.22
LTN1-206ENST00000486427 POTEDQ86YR6 584 aa22.53■■□□□ 1.2
LTN1-206ENST00000486427 MSH5O43196 834 aa22.17■■□□□ 1.14
LTN1-206ENST00000486427 PPP4R3CPQ6ZMV5 832 aa21.23■□□□□ 0.99
LTN1-206ENST00000486427 SCAF1Q9H7N4 1312 aaKnown RBP21.02■□□□□ 0.95
LTN1-206ENST00000486427 MAPK8IP2Q13387 824 aaPredicted RBP21.01■□□□□ 0.95
LTN1-206ENST00000486427 KCNA4P22459 653 aa20.69■□□□□ 0.9
LTN1-206ENST00000486427 DMRT2Q9Y5R5 561 aa20.67■□□□□ 0.9
LTN1-206ENST00000486427 CNKSR2Q8WXI2 1034 aa20.63■□□□□ 0.89
LTN1-206ENST00000486427 NCBP3Q53F19 620 aaKnown RBP20.59■□□□□ 0.89
LTN1-206ENST00000486427 NPM3O75607 178 aaKnown RBP20.37■□□□□ 0.85
LTN1-206ENST00000486427 RNF216Q9NWF9 866 aaPredicted RBP20.25■□□□□ 0.83
LTN1-206ENST00000486427 HOXD11P31277 338 aaPredicted RBP20.21■□□□□ 0.83
LTN1-206ENST00000486427 DCAF8L1A6NGE4 600 aa19.77■□□□□ 0.76
LTN1-206ENST00000486427 DNAJC5BQ9UF47 199 aa19.74■□□□□ 0.75
LTN1-206ENST00000486427 SLC4A1APQ9BWU0 796 aaKnown RBP19.64■□□□□ 0.73
LTN1-206ENST00000486427 SLC4A2P04920 1241 aa19.28■□□□□ 0.68
LTN1-206ENST00000486427 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.24■□□□□ 0.67
LTN1-206ENST00000486427 CACNB1Q02641 598 aaPredicted RBP19.21■□□□□ 0.67
LTN1-206ENST00000486427 ZBTB22O15209 634 aa19.08■□□□□ 0.64
LTN1-206ENST00000486427 RNF39Q9H2S5 420 aa19.04■□□□□ 0.64
LTN1-206ENST00000486427 EHMT2Q96KQ7 1210 aa19.02■□□□□ 0.64
LTN1-206ENST00000486427 FOXD4L1Q9NU39 408 aa19.02■□□□□ 0.64
LTN1-206ENST00000486427 U3KPZ7 1027 aaPredicted RBP18.97■□□□□ 0.63
LTN1-206ENST00000486427 CSRNP3Q8WYN3 585 aa18.86■□□□□ 0.61
LTN1-206ENST00000486427 MYCNP04198 464 aaPredicted RBP18.78■□□□□ 0.6
LTN1-206ENST00000486427 C1QBPQ07021 282 aaKnown RBP18.76■□□□□ 0.59
LTN1-206ENST00000486427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.59■□□□□ 0.57
LTN1-206ENST00000486427 HNRNPUL2Q1KMD3 747 aaKnown RBP18.59■□□□□ 0.57
LTN1-206ENST00000486427 SAMD1Q6SPF0 538 aaPredicted RBP18.55■□□□□ 0.56
LTN1-206ENST00000486427 SPINK5Q9NQ38 1064 aaPredicted RBP18.48■□□□□ 0.55
LTN1-206ENST00000486427 APLP2Q06481 763 aa18.39■□□□□ 0.53
LTN1-206ENST00000486427 ATF5Q9Y2D1 282 aaPredicted RBP18.37■□□□□ 0.53
LTN1-206ENST00000486427 CAPN15O75808 1086 aa18.36■□□□□ 0.53
LTN1-206ENST00000486427 ATXN8OSP0DMR3 200 aa18.32■□□□□ 0.52
LTN1-206ENST00000486427 TRHP20396 242 aaPredicted RBP18.26■□□□□ 0.51
LTN1-206ENST00000486427 ZNF219Q9P2Y4 722 aaPredicted RBP18.21■□□□□ 0.51
LTN1-206ENST00000486427 DSG3P32926 999 aa18.09■□□□□ 0.49
LTN1-206ENST00000486427 ABCB7O75027 752 aa18.04■□□□□ 0.48
LTN1-206ENST00000486427 POLA2Q14181 598 aa17.95■□□□□ 0.46
LTN1-206ENST00000486427 ZBTB12Q9Y330 459 aaPredicted RBP17.57■□□□□ 0.4
LTN1-206ENST00000486427 MKRN4PQ13434 485 aaPredicted RBP17.56■□□□□ 0.4
LTN1-206ENST00000486427 POTEHQ6S545 545 aa17.52■□□□□ 0.4
LTN1-206ENST00000486427 FBLN2P98095 1184 aa17.49■□□□□ 0.39
LTN1-206ENST00000486427 OSCARQ8IYS5 282 aa17.36■□□□□ 0.37
LTN1-206ENST00000486427 RBM42Q9BTD8 480 aaKnown RBP17.16■□□□□ 0.34
LTN1-206ENST00000486427 SPDYE2BA6NHP3 402 aa17.13■□□□□ 0.33
LTN1-206ENST00000486427 SPDYE6P0CI01 402 aa17.13■□□□□ 0.33
LTN1-206ENST00000486427 SPDYE2Q495Y8 402 aa17.13■□□□□ 0.33
LTN1-206ENST00000486427 SPDYE4A6NLX3 237 aa17.07■□□□□ 0.32
LTN1-206ENST00000486427 ZNF692Q9BU19 519 aaPredicted RBP17.06■□□□□ 0.32
LTN1-206ENST00000486427 FKBP8Q14318 412 aa17.03■□□□□ 0.32
LTN1-206ENST00000486427 SSUH2Q9Y2M2 353 aa17.03■□□□□ 0.32
LTN1-206ENST00000486427 AKT1S1Q96B36 256 aa16.97■□□□□ 0.31
LTN1-206ENST00000486427 PABPN1Q86U42 306 aaKnown RBP eCLIP16.85■□□□□ 0.29
LTN1-206ENST00000486427 REM2Q8IYK8 340 aaPredicted RBP16.84■□□□□ 0.29
LTN1-206ENST00000486427 PROM2Q8N271 834 aa16.8■□□□□ 0.28
LTN1-206ENST00000486427 PITPNM1O00562 1244 aa16.67■□□□□ 0.26
LTN1-206ENST00000486427 SPDYE1Q8NFV5 336 aaPredicted RBP16.64■□□□□ 0.25
LTN1-206ENST00000486427 CLEC11AQ9Y240 323 aa16.59■□□□□ 0.25
LTN1-206ENST00000486427 CHRDL2Q6WN34 429 aa16.54■□□□□ 0.24
LTN1-206ENST00000486427 STAG3Q9UJ98 1225 aa16.49■□□□□ 0.23
LTN1-206ENST00000486427 PRR29P0C7W0 189 aa16.41■□□□□ 0.22
LTN1-206ENST00000486427 FBXO3Q9UK99 471 aa16.37■□□□□ 0.21
LTN1-206ENST00000486427 FXR2P51116 673 aaKnown RBP eCLIP16.35■□□□□ 0.21
LTN1-206ENST00000486427 PIP4P2Q8N4L2 257 aa16.34■□□□□ 0.21
LTN1-206ENST00000486427 CHADLQ6NUI6 762 aa16.25■□□□□ 0.19
LTN1-206ENST00000486427 CREBZFQ9NS37 354 aa16.24■□□□□ 0.19
LTN1-206ENST00000486427 PRKAR2AP13861 404 aaKnown RBP16.22■□□□□ 0.19
LTN1-206ENST00000486427 VASPP50552 380 aaPredicted RBP16.21■□□□□ 0.19
LTN1-206ENST00000486427 MIER1Q8N108 512 aa16.18■□□□□ 0.18
LTN1-206ENST00000486427 PLCD3Q8N3E9 789 aa16.14■□□□□ 0.17
LTN1-206ENST00000486427 SP7Q8TDD2 431 aaPredicted RBP16.13■□□□□ 0.17
LTN1-206ENST00000486427 MNX1P50219 401 aaPredicted RBP16.08■□□□□ 0.16
LTN1-206ENST00000486427 FARP1Q9Y4F1 1045 aaPredicted RBP16.05■□□□□ 0.16
LTN1-206ENST00000486427 PLEKHG5O94827 1062 aa16.02■□□□□ 0.16
LTN1-206ENST00000486427 IFNLR1Q8IU57 520 aaPredicted RBP16.02■□□□□ 0.16
LTN1-206ENST00000486427 KLHL34Q8N239 644 aa15.93■□□□□ 0.14
LTN1-206ENST00000486427 ZBTB47Q9UFB7 747 aaPredicted RBP15.91■□□□□ 0.14
LTN1-206ENST00000486427 NPM1P06748 294 aaKnown RBP eCLIP15.88■□□□□ 0.13
LTN1-206ENST00000486427 NUBP1P53384 320 aa15.82■□□□□ 0.12
LTN1-206ENST00000486427 C19orf67A6NJJ6 358 aa15.8■□□□□ 0.12
LTN1-206ENST00000486427 HAX1O00165 279 aa15.8■□□□□ 0.12
LTN1-206ENST00000486427 SPOCK2Q92563 424 aa15.79■□□□□ 0.12
LTN1-206ENST00000486427 RASEFQ8IZ41 740 aa15.78■□□□□ 0.12
LTN1-206ENST00000486427 CD44P16070 742 aaKnown RBP15.75■□□□□ 0.11
LTN1-206ENST00000486427 EVX2Q03828 476 aa15.74■□□□□ 0.11
LTN1-206ENST00000486427 TSPYL2Q9H2G4 693 aaPredicted RBP15.69■□□□□ 0.1
LTN1-206ENST00000486427 ZRANB1Q9UGI0 708 aa15.65■□□□□ 0.1
LTN1-206ENST00000486427 FAM212AQ96EL1 285 aa15.63■□□□□ 0.09
LTN1-206ENST00000486427 PAK3O75914 559 aaPredicted RBP15.62■□□□□ 0.09
LTN1-206ENST00000486427 DCAF8Q5TAQ9 597 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms