RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 IGKV1-12A0A0C4DH73 117 aa14.27□□□□□ -0.12
PTPRF-209ENST00000438120 IGKV1D-12P01611 117 aa14.27□□□□□ -0.12
PTPRF-209ENST00000438120 LEPP41159 167 aa14.27□□□□□ -0.12
PTPRF-209ENST00000438120 GTF3AQ92664 365 aaKnown RBP14.27□□□□□ -0.13
PTPRF-209ENST00000438120 ATRAIDQ6UW56 229 aa14.27□□□□□ -0.13
PTPRF-209ENST00000438120 TMEM167AQ8TBQ9 72 aa14.27□□□□□ -0.13
PTPRF-209ENST00000438120 DICER1Q9UPY3 1922 aaKnown RBP14.27□□□□□ -0.13
PTPRF-209ENST00000438120 IGLV3-32A0A0A0MS00 114 aa14.27□□□□□ -0.13
PTPRF-209ENST00000438120 E9PLN8 166 aa14.27□□□□□ -0.13
PTPRF-209ENST00000438120 RPL23P62829 140 aaKnown RBP14.27□□□□□ -0.13
PTPRF-209ENST00000438120 KLRD1Q13241 179 aa14.27□□□□□ -0.13
PTPRF-209ENST00000438120 SRSF6Q13247 344 aaKnown RBP14.27□□□□□ -0.13
PTPRF-209ENST00000438120 ZNF324BQ6AW86 544 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-209ENST00000438120 VKORC1Q9BQB6 163 aa14.27□□□□□ -0.13
PTPRF-209ENST00000438120 OTORQ9NRC9 128 aa14.27□□□□□ -0.13
PTPRF-209ENST00000438120 MLNRO43193 412 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 PRR31Q5SQ13 230 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 C10orf55Q5SWW7 151 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 LINC00518Q8N0U6 118 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 GFI1Q99684 422 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 KLHDC3Q9BQ90 382 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 NEUROG3Q9Y4Z2 214 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 PDCD11Q14690 1871 aaKnown RBP14.26□□□□□ -0.13
PTPRF-209ENST00000438120 A0A1B0GV90 55 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 HOXA5P20719 270 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 ZNF585BQ52M93 769 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 OR10J3Q5JRS4 329 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 IZUMO1RA6ND01 250 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 APOMO95445 188 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 CCL1P22362 96 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 DUTP33316 252 aaKnown RBP14.26□□□□□ -0.13
PTPRF-209ENST00000438120 GGNQ86UU5 652 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 ORMDL3Q8N138 153 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 CACNA1GO43497 2377 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 LINC00271P0C7V0 271 aa14.26□□□□□ -0.13
PTPRF-209ENST00000438120 TRAV5A0A0B4J249 113 aa14.25□□□□□ -0.13
PTPRF-209ENST00000438120 TCRBV4S1A1TA0A5B7 111 aa14.25□□□□□ -0.13
PTPRF-209ENST00000438120 OR5AN1Q8NGI8 311 aa14.25□□□□□ -0.13
PTPRF-209ENST00000438120 VSIRQ9H7M9 311 aa14.25□□□□□ -0.13
PTPRF-209ENST00000438120 CARHSP1Q9Y2V2 147 aaKnown RBP14.25□□□□□ -0.13
PTPRF-209ENST00000438120 ZNF672Q499Z4 452 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-209ENST00000438120 C5orf24Q7Z6I8 188 aa14.25□□□□□ -0.13
PTPRF-209ENST00000438120 DEFB104AQ8WTQ1 72 aa14.25□□□□□ -0.13
PTPRF-209ENST00000438120 FABP5P3A8MUU1 101 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 H0YIZ8 118 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 PAX1P15863 534 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 Q0VFX4 171 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 ATP5LO75964 103 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 LY6G6FQ5SQ64 297 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 EVI2AP22794 236 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 METRNQ9UJH8 293 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 TTC9CQ8N5M4 171 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 DMRT1Q9Y5R6 373 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 MYOD1P15172 320 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 WFDC1Q9HC57 220 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 EPDR1Q9UM22 224 aa14.24□□□□□ -0.13
PTPRF-209ENST00000438120 CRYGSP22914 178 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 SFTA2Q6UW10 78 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-209ENST00000438120 RALGAPA1Q6GYQ0 2036 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 SIPA1L1O43166 1804 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 TSPAN13O95857 204 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 CA1P00915 261 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-209ENST00000438120 GNLYP22749 145 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 VMO1Q7Z5L0 202 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 J3QRE1 110 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 TYMSP04818 313 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 ADMP35318 185 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 PVRIGQ6DKI7 326 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 DOCK4Q8N1I0 1966 aa14.23□□□□□ -0.13
PTPRF-209ENST00000438120 H3BRM9 83 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 NAPSAO96009 420 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 TTC32Q5I0X7 151 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 IGKV1-27A0A075B6S5 117 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 CCL20P78556 96 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 PRCDQ00LT1 54 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 C8orf46Q8TAG6 207 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 INTS1Q8N201 2190 aaKnown RBP14.22□□□□□ -0.13
PTPRF-209ENST00000438120 EP300Q09472 2414 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-209ENST00000438120 SERF1AO75920 110 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 CFAP161Q6P656 301 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 C5orf63A6NC05 138 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 ZNF600Q6ZNG1 722 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 FAM89BQ8N5H3 189 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 EFNB3Q15768 340 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 BRD3OSQ6XYD6 125 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 NABP1Q96AH0 204 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 PSG8Q9UQ74 426 aa14.22□□□□□ -0.13
PTPRF-209ENST00000438120 IGHV2-26A0A0B4J1V2 119 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 WNT2P09544 360 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 MALP21145 153 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 JMJD8Q96S16 334 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 TMEM200BQ69YZ2 307 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 C1QL4Q86Z23 238 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 SOX21Q9Y651 276 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-209ENST00000438120 F8VVB4 439 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 F8VWA3 439 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 CNTFRP26992 372 aa14.21□□□□□ -0.13
PTPRF-209ENST00000438120 RPL15P61313 204 aaKnown RBP14.21□□□□□ -0.13
PTPRF-209ENST00000438120 PSMG4Q5JS54 123 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms