RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 TGIF2-C20orf24A0A0A6YYL0 155 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 IGHV2-26A0A0B4J1V2 119 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 K7ENP7 123 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 CGAP01215 116 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 STAG3L3P0CL85 134 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 RPL35AP18077 110 aaKnown RBP9.12□□□□□ -0.95
CLIP1-203ENST00000361654 TDGF1P3P51864 188 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 ORMDL3Q8N138 153 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 CXorf65A6NEN9 183 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 PSPNO60542 156 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 SNRNP200O75643 2136 aaKnown RBP9.12□□□□□ -0.95
CLIP1-203ENST00000361654 FHITP49789 147 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 PKIAP61925 76 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 FOXF2Q12947 444 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 GSN-AS1Q9NRJ2 163 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 LINC00527Q9UJ94 153 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 F11RQ9Y624 299 aaKnown RBP9.12□□□□□ -0.95
CLIP1-203ENST00000361654 RNF223E7ERA6 249 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 TPTE2P1Q5T6R2 138 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 BIVMQ86UB2 503 aa9.12□□□□□ -0.95
CLIP1-203ENST00000361654 GTF3AQ92664 365 aaKnown RBP9.12□□□□□ -0.95
CLIP1-203ENST00000361654 ZNFX1Q9P2E3 1918 aaKnown RBP9.12□□□□□ -0.95
CLIP1-203ENST00000361654 A0A0G2JNJ9 132 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 Q9UFV3 132 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 PRR32B1ATL7 298 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 TMEM219Q86XT9 240 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 OR1P1Q8NH06 330 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 RCHY1Q96PM5 261 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 UQCR10Q9UDW1 63 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 TDRD15B5MCY1 1934 aaKnown RBP9.11□□□□□ -0.95
CLIP1-203ENST00000361654 POLR2AP24928 1970 aaKnown RBP9.11□□□□□ -0.95
CLIP1-203ENST00000361654 FBLN7Q53RD9 439 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 S100A7L2Q5SY68 101 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 PLPPR1Q8TBJ4 325 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 TMEM178BH3BS89 294 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 TNFSF13O75888 250 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 MDKP21741 143 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-203ENST00000361654 C18orf15Q96N68 181 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 TAF1LQ8IZX4 1826 aa9.11□□□□□ -0.95
CLIP1-203ENST00000361654 C1QTNF9BB2RNN3 333 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 H2BFSP57053 126 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 PLP1P60201 277 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 PRB3Q04118 309 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 BRD3OSQ6XYD6 125 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 ZNF837Q96EG3 531 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 CYSLTR1Q9Y271 337 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 TRBV6-7A0A0A0MS04 114 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 TGFBR3LH3BV60 316 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 TRBV7-1A0A0A6YYK4 115 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 A0A1B0GV90 55 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 SHISA3A0PJX4 238 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 F8WEM9 126 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 KIAA1644Q3SXP7 199 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 C1QL2Q7Z5L3 287 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 FOXC2Q99958 501 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 SEPSECSQ9HD40 501 aaKnown RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 COL4A5P29400 1685 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 ACACAQ13085 2346 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 INSP01308 110 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 APOHP02749 345 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 DANCRP0C864 163 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 IGHV1-8P0DP01 117 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 CD28P10747 220 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 C15orf32Q32M92 178 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 HEPN1Q6WQI6 88 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 RNF182Q8N6D2 247 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 WFDC6Q9BQY6 131 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 RPUSD1Q9UJJ7 312 aaKnown RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 DOCK5Q9H7D0 1870 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 PINLYPA6NC86 204 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 MBD3L4A6NDZ8 208 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 MBD3L3A6NE82 208 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 MBD3L5A6NJ08 208 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 MBD3L2Q8NHZ7 208 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-203ENST00000361654 CST9LQ9H4G1 147 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 JPT2Q9H910 190 aa9.1□□□□□ -0.95
CLIP1-203ENST00000361654 SPTBP11277 2137 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 ESPL1Q14674 2120 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 TRGV1A0A0A0MS02 117 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 IGKV1D-43A0A0B4J1Z2 117 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 MSMBP08118 114 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 FAM90A9PA6NNJ1 464 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 SRRM5B3KS81 715 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 TSPAN13O95857 204 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 TTC32Q5I0X7 151 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 ZNF497Q6ZNH5 498 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 KIAA1217Q5T5P2 1943 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 IGKV3D-20A0A0C4DH25 116 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 OTX1P32242 354 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-203ENST00000361654 TMEM155Q4W5P6 130 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 SLC25A15Q9Y619 301 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 LCN12Q6JVE5 192 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 MORN3Q6PF18 240 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-203ENST00000361654 Q96MF0 132 aa9.09□□□□□ -0.95
CLIP1-203ENST00000361654 MRPL16Q9NX20 251 aaKnown RBP9.09□□□□□ -0.95
CLIP1-203ENST00000361654 FAM223BA6NKX1 122 aa9.08□□□□□ -0.96
CLIP1-203ENST00000361654 APOMO95445 188 aa9.08□□□□□ -0.96
CLIP1-203ENST00000361654 PPBPP02775 128 aa9.08□□□□□ -0.96
CLIP1-203ENST00000361654 TRGC2P03986 189 aa9.08□□□□□ -0.96
CLIP1-203ENST00000361654 SMIM13P0DJ93 91 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms