RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 DCAF8L2P0C7V8 631 aa19.23■□□□□ 0.67
CLIP1-203ENST00000361654 SUPT5HO00267 1087 aaKnown RBP17.73■□□□□ 0.43
CLIP1-203ENST00000361654 FAM9AQ8IZU1 332 aaPredicted RBP17.69■□□□□ 0.42
CLIP1-203ENST00000361654 APLP2Q06481 763 aa17.45■□□□□ 0.38
CLIP1-203ENST00000361654 NISCHQ9Y2I1 1504 aa17.29■□□□□ 0.36
CLIP1-203ENST00000361654 EHMT2Q96KQ7 1210 aa17.27■□□□□ 0.35
CLIP1-203ENST00000361654 PELP1Q8IZL8 1130 aaKnown RBP17.26■□□□□ 0.35
CLIP1-203ENST00000361654 SHROOM4Q9ULL8 1493 aa17.26■□□□□ 0.35
CLIP1-203ENST00000361654 ATP1B4Q9UN42 357 aaPredicted RBP16.81■□□□□ 0.28
CLIP1-203ENST00000361654 RANGAP1P46060 587 aaPredicted RBP16.71■□□□□ 0.27
CLIP1-203ENST00000361654 TTBK1Q5TCY1 1321 aaPredicted RBP16.66■□□□□ 0.26
CLIP1-203ENST00000361654 CCER1Q8TC90 406 aaPredicted RBP16.53■□□□□ 0.24
CLIP1-203ENST00000361654 MYT1LQ9UL68 1186 aa16.52■□□□□ 0.23
CLIP1-203ENST00000361654 TRIM41Q8WV44 630 aa16.52■□□□□ 0.23
CLIP1-203ENST00000361654 UBTFP17480 764 aaKnown RBP16.51■□□□□ 0.23
CLIP1-203ENST00000361654 ERICH6Q7L0X2 663 aa16.43■□□□□ 0.22
CLIP1-203ENST00000361654 PCGF6Q9BYE7 350 aa16.43■□□□□ 0.22
CLIP1-203ENST00000361654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.34■□□□□ 0.21
CLIP1-203ENST00000361654 HNRNPUL2Q1KMD3 747 aaKnown RBP16.34■□□□□ 0.21
CLIP1-203ENST00000361654 CENPBP07199 599 aaPredicted RBP16.28■□□□□ 0.2
CLIP1-203ENST00000361654 ZEB1P37275 1124 aaPredicted RBP16.28■□□□□ 0.2
CLIP1-203ENST00000361654 NEFLP07196 543 aa16.23■□□□□ 0.19
CLIP1-203ENST00000361654 CHIC1Q5VXU3 224 aa16.03■□□□□ 0.16
CLIP1-203ENST00000361654 POLR3GLQ9BT43 218 aa16.01■□□□□ 0.15
CLIP1-203ENST00000361654 HRCP23327 699 aa15.97■□□□□ 0.15
CLIP1-203ENST00000361654 SLC4A1APQ9BWU0 796 aaKnown RBP15.96■□□□□ 0.14
CLIP1-203ENST00000361654 DAXXQ9UER7 740 aaPredicted RBP15.94■□□□□ 0.14
CLIP1-203ENST00000361654 ITGAEP38570 1179 aa15.93■□□□□ 0.14
CLIP1-203ENST00000361654 MYT1Q01538 1121 aa15.92■□□□□ 0.14
CLIP1-203ENST00000361654 YTHDC1Q96MU7 727 aaKnown RBP15.79■□□□□ 0.12
CLIP1-203ENST00000361654 PPARGC1BQ86YN6 1023 aaKnown RBP15.75■□□□□ 0.11
CLIP1-203ENST00000361654 CNGB1Q14028 1251 aaPredicted RBP15.68■□□□□ 0.1
CLIP1-203ENST00000361654 FBLN2P98095 1184 aa15.66■□□□□ 0.1
CLIP1-203ENST00000361654 BCANQ96GW7 911 aa15.6■□□□□ 0.09
CLIP1-203ENST00000361654 TRIM52Q96A61 297 aa15.6■□□□□ 0.09
CLIP1-203ENST00000361654 CLSPNQ9HAW4 1339 aa15.6■□□□□ 0.09
CLIP1-203ENST00000361654 TRIM26Q12899 539 aaPredicted RBP15.59■□□□□ 0.09
CLIP1-203ENST00000361654 PABPN1Q86U42 306 aaKnown RBP eCLIP15.58■□□□□ 0.08
CLIP1-203ENST00000361654 FAM50AQ14320 339 aaKnown RBP15.57■□□□□ 0.08
CLIP1-203ENST00000361654 ESF1Q9H501 851 aaKnown RBP15.55■□□□□ 0.08
CLIP1-203ENST00000361654 ZBTB47Q9UFB7 747 aaPredicted RBP15.54■□□□□ 0.08
CLIP1-203ENST00000361654 ABCC9O60706 1549 aa15.5■□□□□ 0.07
CLIP1-203ENST00000361654 NEFMP07197 916 aa15.49■□□□□ 0.07
CLIP1-203ENST00000361654 SLC24A1O60721 1099 aa15.48■□□□□ 0.07
CLIP1-203ENST00000361654 ZNF316A6NFI3 1004 aaPredicted RBP15.46■□□□□ 0.07
CLIP1-203ENST00000361654 NPM1P06748 294 aaKnown RBP eCLIP15.41■□□□□ 0.06
CLIP1-203ENST00000361654 ZNF326Q5BKZ1 582 aaKnown RBP15.38■□□□□ 0.05
CLIP1-203ENST00000361654 CDK11AQ9UQ88 783 aaPredicted RBP15.33■□□□□ 0.04
CLIP1-203ENST00000361654 STAG3Q9UJ98 1225 aa15.31■□□□□ 0.04
CLIP1-203ENST00000361654 NEUROD1Q13562 356 aa15.28■□□□□ 0.04
CLIP1-203ENST00000361654 RTL5Q5HYW3 569 aaPredicted RBP15.27■□□□□ 0.04
CLIP1-203ENST00000361654 LOC105371045A0A1W2PR82 267 aa15.27■□□□□ 0.03
CLIP1-203ENST00000361654 CANXP27824 592 aaKnown RBP15.25■□□□□ 0.03
CLIP1-203ENST00000361654 ZNF777Q9ULD5 760 aaPredicted RBP15.22■□□□□ 0.03
CLIP1-203ENST00000361654 PLPPR3Q6T4P5 718 aa15.21■□□□□ 0.03
CLIP1-203ENST00000361654 ARID3CA6NKF2 412 aa15.18■□□□□ 0.02
CLIP1-203ENST00000361654 ANP32CO43423 234 aa15.16■□□□□ 0.02
CLIP1-203ENST00000361654 CHGAP10645 457 aaKnown RBP15.16■□□□□ 0.02
CLIP1-203ENST00000361654 BCL11AQ9H165 835 aa15.13■□□□□ 0.01
CLIP1-203ENST00000361654 GTF3C3Q9Y5Q9 886 aa15.12■□□□□ 0.01
CLIP1-203ENST00000361654 P3H3Q8IVL6 736 aa15.12■□□□□ 0.01
CLIP1-203ENST00000361654 DIEXFQ68CQ4 756 aaKnown RBP15.05■□□□□ -0
CLIP1-203ENST00000361654 NPM2Q86SE8 214 aaKnown RBP15.01□□□□□ -0.01
CLIP1-203ENST00000361654 ACIN1Q9UKV3 1341 aaKnown RBP15□□□□□ -0.01
CLIP1-203ENST00000361654 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
CLIP1-203ENST00000361654 CSRNP3Q8WYN3 585 aa14.95□□□□□ -0.02
CLIP1-203ENST00000361654 A0A0G2JS52 829 aa14.94□□□□□ -0.02
CLIP1-203ENST00000361654 CHMP7Q8WUX9 453 aaPredicted RBP14.9□□□□□ -0.02
CLIP1-203ENST00000361654 TSPY4P0CV99 314 aa14.9□□□□□ -0.02
CLIP1-203ENST00000361654 TSPY10P0CW01 314 aa14.9□□□□□ -0.02
CLIP1-203ENST00000361654 C14orf37Q86TY3 774 aa14.88□□□□□ -0.03
CLIP1-203ENST00000361654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.87□□□□□ -0.032e-7■■□□□ 13.3
CLIP1-203ENST00000361654 PPP1R15AO75807 674 aaPredicted RBP14.85□□□□□ -0.03
CLIP1-203ENST00000361654 HAP1P54257 671 aaPredicted RBP14.84□□□□□ -0.03
CLIP1-203ENST00000361654 HSP90AA1P07900 732 aaKnown RBP14.82□□□□□ -0.04
CLIP1-203ENST00000361654 TONSLQ96HA7 1378 aa14.8□□□□□ -0.04
CLIP1-203ENST00000361654 ARID4BQ4LE39 1312 aaPredicted RBP14.8□□□□□ -0.04
CLIP1-203ENST00000361654 UPF2Q9HAU5 1272 aaKnown RBP14.79□□□□□ -0.04
CLIP1-203ENST00000361654 ANP32BQ92688 251 aaKnown RBP14.78□□□□□ -0.04
CLIP1-203ENST00000361654 ZBTB7CA1YPR0 619 aa14.76□□□□□ -0.05
CLIP1-203ENST00000361654 CDK11BP21127 795 aaKnown RBP14.75□□□□□ -0.05
CLIP1-203ENST00000361654 ANP32AP39687 249 aaKnown RBP14.74□□□□□ -0.05
CLIP1-203ENST00000361654 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.72□□□□□ -0.05
CLIP1-203ENST00000361654 SCRIBQ14160 1630 aa14.71□□□□□ -0.05
CLIP1-203ENST00000361654 WDR43Q15061 677 aaKnown RBP eCLIP14.71□□□□□ -0.05
CLIP1-203ENST00000361654 DCAF1Q9Y4B6 1507 aa14.69□□□□□ -0.06
CLIP1-203ENST00000361654 KCNH8Q96L42 1107 aa14.69□□□□□ -0.06
CLIP1-203ENST00000361654 PLEKHG5O94827 1062 aa14.68□□□□□ -0.06
CLIP1-203ENST00000361654 CHIC2Q9UKJ5 165 aa14.68□□□□□ -0.06
CLIP1-203ENST00000361654 MYH16Q9H6N6 1097 aa14.68□□□□□ -0.06
CLIP1-203ENST00000361654 PLEKHD1A6NEE1 506 aa14.67□□□□□ -0.06
CLIP1-203ENST00000361654 MTUS2Q5JR59 1369 aa14.65□□□□□ -0.06
CLIP1-203ENST00000361654 TMC1Q8TDI8 760 aa14.64□□□□□ -0.07
CLIP1-203ENST00000361654 KDM2AQ9Y2K7 1162 aa14.63□□□□□ -0.07
CLIP1-203ENST00000361654 TRHP20396 242 aaPredicted RBP14.61□□□□□ -0.07
CLIP1-203ENST00000361654 ARXQ96QS3 562 aa14.6□□□□□ -0.07
CLIP1-203ENST00000361654 MYO15BQ96JP2 1530 aa14.59□□□□□ -0.07
CLIP1-203ENST00000361654 NPHP1O15259 732 aa14.58□□□□□ -0.08
CLIP1-203ENST00000361654 FAM9BQ8IZU0 186 aa14.56□□□□□ -0.08
CLIP1-203ENST00000361654 SALL2Q9Y467 1007 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms