RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NPDC1Q9NQX5 325 aaPredicted RBP11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 CCL20P78556 96 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 FAM90A2PQ658T7 463 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 HLA-DQB1P01920 261 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 ADMP35318 185 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 RPL36AP83881 106 aaKnown RBP11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 RPL36ALQ969Q0 106 aaKnown RBP11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 COL6A6A6NMZ7 2263 aa11.77□□□□□ -0.53
CCDC88A-201ENST00000263630 TRBV5-5A0A0J9YX44 114 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 A0A1W2PRX2 142 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 DUSP15Q9H1R2 295 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 PRSS23O95084 383 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 CXCL10P02778 98 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 EREGO14944 169 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 EGR2P11161 476 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 TMEM8BA6NDV4 472 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 SPRED2Q7Z698 418 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 SCN7AQ01118 1682 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 TCRBV4S1A1TA0A5B7 111 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 RASL11AQ6T310 242 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 RBBP6Q7Z6E9 1792 aaKnown RBP11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 NPIPB13A6NJU9 1138 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 ZNF124Q15973 351 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 IGHV1-45A0A0A0MS14 117 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 TRAV8-3A0A0A6YYJ7 113 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 IQCF6A8MYZ5 107 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 PAPPA2Q9BXP8 1791 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 PLXNA1Q9UIW2 1896 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 GTSF1LQ9H1H1 148 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 PPP1R3EQ9H7J1 279 aa11.76□□□□□ -0.53
CCDC88A-201ENST00000263630 DLEC1Q9Y238 1755 aa11.75□□□□□ -0.53
CCDC88A-201ENST00000263630 C1orf100Q5SVJ3 147 aa11.75□□□□□ -0.53
CCDC88A-201ENST00000263630 OSTCQ9NRP0 149 aa11.75□□□□□ -0.53
CCDC88A-201ENST00000263630 SELLP14151 372 aa11.75□□□□□ -0.53
CCDC88A-201ENST00000263630 CCL4P13236 92 aa11.75□□□□□ -0.53
CCDC88A-201ENST00000263630 CD300EQ496F6 205 aaPredicted RBP11.75□□□□□ -0.53
CCDC88A-201ENST00000263630 EFEMP2O95967 443 aa11.75□□□□□ -0.53
CCDC88A-201ENST00000263630 WBP1LQ9NX94 342 aa11.75□□□□□ -0.53
CCDC88A-201ENST00000263630 SLC25A47Q6Q0C1 308 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 PARP14Q460N5 1801 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 SIGLEC15Q6ZMC9 328 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 RNASE7Q9H1E1 156 aaKnown RBP11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 FBXL15Q9H469 300 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 IGHG3P01860 377 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 C1QAP02745 245 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 FAM90A1Q86YD7 464 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 KLHDC2Q9Y2U9 406 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 A8MXK9 166 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 BHLHA9Q7RTU4 235 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 ZNF114Q8NC26 417 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 ANK1P16157 1881 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 C15orf61A6NNL5 157 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 SIGLEC14Q08ET2 396 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 NEUROG3Q9Y4Z2 214 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 PTPRDP23468 1912 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 MMP23AO75900 390 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 GLMPQ8WWB7 406 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 ZNF625Q96I27 306 aaPredicted RBP11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 A0A0J9YW62 118 aa11.74□□□□□ -0.53
CCDC88A-201ENST00000263630 PCOLCEQ15113 449 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 CFHR5Q9BXR6 569 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 IGHV3OR16-10A0A075B7F0 116 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 GLRXP35754 106 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 C1QTNF4Q9BXJ3 329 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 CHKB-CPT1BH3BT56 60 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 CELA2BP08218 269 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 BCL6BQ8N143 479 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 A0A0G2JMM0 328 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 A0A1W2PPB8 328 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 KIR3DP1A8MWS1 328 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 ACP7Q6ZNF0 438 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 NKAPP1Q8N9T2 125 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 RCHY1Q96PM5 261 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 NBR2O15453 112 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 SRD5A1P18405 259 aa11.73□□□□□ -0.53
CCDC88A-201ENST00000263630 VCYO14598 125 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 C1QTNF9P0C862 333 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 H2BFSP57053 126 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 IFITM1P13164 125 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 LOC285556D6RIA3 1793 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 TRBV20-1A0A075B6N2 111 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 RPL39P5Q59GN2 51 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 HOXB3P14651 431 aaPredicted RBP11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 COLCA1Q6ZS62 124 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 EML6Q6ZMW3 1958 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 SRP19P09132 144 aaKnown RBP11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 LHX2P50458 406 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 TFF3Q07654 80 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 KLF17Q5JT82 389 aaPredicted RBP11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 TMEM92Q6UXU6 159 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 RNF125Q96EQ8 232 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 MSGN1A6NI15 193 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 NEGR1Q7Z3B1 354 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 C8orf46Q8TAG6 207 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 CISD3P0C7P0 127 aa11.72□□□□□ -0.53
CCDC88A-201ENST00000263630 HRKO00198 91 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 NDUFS5O43920 106 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 CD160O95971 181 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 PGFP49763 221 aa11.71□□□□□ -0.53
CCDC88A-201ENST00000263630 SLC25A48Q6ZT89 311 aaKnown RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms