RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 HMGXB3Q12766 1538 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 DENND4BO75064 1496 aaPredicted RBP2.53□□□□□ -2
LINC00643-204ENST00000555934 PRXQ9BXM0 1461 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 DCCP43146 1447 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 ROBO3Q96MS0 1386 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 ZNF638Q14966 1978 aaKnown RBP2.53□□□□□ -2
LINC00643-204ENST00000555934 hCG_1818297A0A087WSY0 165 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 MEIKINA0A087WXM9 373 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 A8MT66 165 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 ZNF73O43830 326 aaPredicted RBP2.53□□□□□ -2
LINC00643-204ENST00000555934 BANF1O75531 89 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 OPN1SWP03999 348 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 IFNA4P05014 189 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 C8GP07360 202 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 TSPAN19P0C672 248 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 RPS3P23396 243 aaKnown RBP eCLIP2.53□□□□□ -2
LINC00643-204ENST00000555934 RBP2P50120 134 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 TNFAIP6P98066 277 aaPredicted RBP2.53□□□□□ -2
LINC00643-204ENST00000555934 ZNF283Q8N7M2 679 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 TMEM75Q8N9X5 138 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 TSTD1Q8NFU3 115 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 OR5A1Q8NGJ0 315 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 OR51H1Q8NH63 302 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 PBOV1Q9GZY1 135 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 GNG8Q9UK08 70 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 ANAPC10Q9UM13 185 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 FIS1Q9Y3D6 152 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 U3KQ87 197 aa2.53□□□□□ -2
LINC00643-204ENST00000555934 ARAP3Q8WWN8 1544 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 CLIP1P30622 1438 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 TMED7-TICAM2A0A0A6YYA0 188 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 IGKV1-12A0A0C4DH73 117 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 PVALEFA0A1B0GWK0 134 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 OR4C45A6NMZ5 311 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 RIIAD1A6NNX1 92 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 H3BSA7 217 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 PIRO00625 290 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 MRASO14807 208 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 SLC25A20O43772 301 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 PIAS1O75925 651 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 ZNF682O95780 498 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 FAM107AO95990 144 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 IGKV1D-12P01611 117 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 METTL15P1P0C7V9 234 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 CTSEP14091 401 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 G6PCP35575 357 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 INPP1P49441 399 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 PSMB3P49720 205 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 POLR2HP52434 150 aaKnown RBP2.52□□□□□ -2.01
LINC00643-204ENST00000555934 ZNF140P52738 457 aaPredicted RBP2.52□□□□□ -2.01
LINC00643-204ENST00000555934 DEFA3P59666 94 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 HERVK_113P63121 156 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 FABP9Q0Z7S8 132 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 HTR4Q13639 388 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 NEDD8Q15843 81 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 TMEM86AQ8N2M4 240 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 EXOC3-AS1Q8N2X6 119 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 SLC30A7Q8NEW0 376 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 OR5C1Q8NGR4 320 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 OR2T27Q8NH04 317 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 ACOT12Q8WYK0 555 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 POPDC3Q9HBV1 291 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 WDR97A6NE52 1622 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 ABCC8Q09428 1581 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 MYH2Q9UKX2 1941 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 ITGB4P16144 1822 aa2.52□□□□□ -2.01
LINC00643-204ENST00000555934 BCL9O00512 1426 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 PPIP5K1Q6PFW1 1433 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 FGD6Q6ZV73 1430 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 SHANK3Q9BYB0 1731 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 MED23Q9ULK4 1368 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 MYH10P35580 1976 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 CHD5Q8TDI0 1954 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 FAM92AA1XBS5 289 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 B4DEV8 164 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 G3V3Q6 166 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 TP53I11O14683 189 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 LTAP01374 205 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 RPS4Y1P22090 263 aaKnown RBP2.51□□□□□ -2.01
LINC00643-204ENST00000555934 SRIP30626 198 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 PPP1CCP36873 323 aaKnown RBP2.51□□□□□ -2.01
LINC00643-204ENST00000555934 ATP5G3P48201 142 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 GABARAPL2P60520 117 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 PLCXD2Q0VAA5 305 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 MORN2Q502X0 79 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 TNFAIP8L3Q5GJ75 292 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 HAGHLQ6PII5 290 aaPredicted RBP2.51□□□□□ -2.01
LINC00643-204ENST00000555934 YIPF7Q8N8F6 280 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 OR13C8Q8NGS7 320 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 COMMD5Q9GZQ3 224 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 CACYBPQ9HB71 228 aaKnown RBP2.51□□□□□ -2.01
LINC00643-204ENST00000555934 ZNF286AQ9HBT8 521 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 GPR84Q9NQS5 396 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 SYNJ1O43426 1573 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 UHRF1BP1LA0JNW5 1464 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 CRB1P82279 1406 aa2.51□□□□□ -2.01
LINC00643-204ENST00000555934 EIF4G3O43432 1585 aaKnown RBP2.5□□□□□ -2.01
LINC00643-204ENST00000555934 A0A087WUU8 490 aa2.5□□□□□ -2.01
LINC00643-204ENST00000555934 TRAV4A0A0B4J268 109 aa2.5□□□□□ -2.01
LINC00643-204ENST00000555934 IGHV1-69-2A0A0G2JMI3 117 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms