RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Tctn1Q8BZ64 593 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 Hoxa6P09092 232 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 B4galt1P15535 399 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 Myf5P24699 255 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 Bsph2Q0Q236 131 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 Wfdc5Q4KXB6 126 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 Mmp21Q8K3F2 568 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 NpffQ9WVA8 114 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 PoleQ9WVF7 2283 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 Sbf1Q6ZPE2 1867 aa10.52□□□□□ -0.73
Trim56-201ENSMUST00000054384 Igkv12-98A0A0G2JGF9 115 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Vmn1r149E9PWL6 307 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Vmn1r101E9Q365 307 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Vmn1r158G3UY92 307 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ccl1P10146 92 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Cnn1Q08091 297 aaKnown RBP10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr1362Q5SZZ8 308 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 ParlQ5XJY4 377 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Srrm4Q8BKA3 608 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ifitm10Q8BR26 201 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Srsf4Q8VE97 489 aaKnown RBP10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr822Q8VFU1 312 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ankrd60A2AMD2 318 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Cnr1P47746 473 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Spatc1Q148B6 480 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Zfp747Q8BHM7 422 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Plppr5Q8BJ52 321 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Mpc2Q9D023 127 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Mdga2P60755 949 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Btf3Q64152 204 aaKnown RBP10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Rln3Q8CHK2 141 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Vmn1r73Q8R293 303 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Mrpl42Q9CPV3 142 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Upk1aQ9D132 257 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Nrg4Q9WTX4 115 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Trav5-4A0A075B652 114 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Gfi1bO70237 330 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Cxcl3Q6W5C0 100 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr1026Q7TR90 307 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr1295Q8VF48 312 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ldlrad1D3YYZ1 218 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Slc6a12P31651 614 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Gltpd2Q8K0R6 321 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Eif3iQ9QZD9 325 aaKnown RBP10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Tmem116A0A0G2JGD3 401 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Habp2Q8K0D2 558 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 HpxQ91X72 460 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Dph7Q9CYU6 477 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Dram1Q9DC58 238 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Atoh7Q9Z2E5 149 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Igkv12-46A0A140T8P6 115 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Cmc2Q8K199 79 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Abhd17aQ99JW1 310 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Tmub1Q9JMG3 245 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Sh2d2aQ9QXK9 374 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ctxnd2A0A1B0GQX3 59 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Rnf122Q8BP31 155 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Parp11Q8CFF0 331 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Cypt1Q8CH20 168 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Acer2Q8VD53 275 aa10.51□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ighv1-43A0A0A6YXN5 117 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr1189A2AV11 306 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr467L7N455 308 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Plp1P60202 277 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 St3gal2Q11204 350 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Higd1cQ76I25 96 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Pex11bQ9Z210 259 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Vmn1r194J3JS27 296 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr1331K7N684 317 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Vmn1r128L7N2B4 307 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Mcpt9O35164 246 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Hyal2O35632 473 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Hoxb2P0C1T1 354 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Defa-rs12P50716 91 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Sirt7Q8BKJ9 402 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Sulf2Q8CFG0 875 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Mfsd4b1Q8VCV9 425 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Sp7Q8VI67 428 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Tmem186Q9CR76 216 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 SrfQ9JM73 504 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr1191-ps1A0A1L1STD5 311 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr1335B2RVY8 335 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Gpr183Q3U6B2 357 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Prss37Q9DAA4 237 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ctxnd1A0A1B0GST9 59 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 P06334 169 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 MyogP12979 224 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 FusP56959 518 aaKnown RBP10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Znf511Q6P0X2 227 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Kazald1Q8BJ66 313 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ppp1r3eQ8BRJ4 279 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ndufs8Q8K3J1 212 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Rpusd1Q8VCZ8 306 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Olfr483Q8VG05 315 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Q9D4G1 230 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Plekhb1Q9QYE9 243 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Tial1P70318 392 aaKnown RBP10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Q497N7 227 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Bpifb3Q80ZU7 473 aa10.5□□□□□ -0.73
Trim56-201ENSMUST00000054384 Ubr3Q5U430 1889 aa10.5□□□□□ -0.73
Retrieved 100 of 22,080 RNA–protein pairs in 50 ms