Protein–RNA interactions for Protein: A0A075B652

Trav5-4, T cell receptor alpha variable 5-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5-4A0A075B652 Gm25239-201ENSMUST00000174915 86 ntBASIC29.65■■■□□ 2.34
Trav5-4A0A075B652 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Trav5-4A0A075B652 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Trav5-4A0A075B652 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
Trav5-4A0A075B652 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Trav5-4A0A075B652 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Trav5-4A0A075B652 Gm15042-201ENSMUST00000120212 883 ntBASIC26.42■■□□□ 1.82
Trav5-4A0A075B652 Psd-208ENSMUST00000224556 2034 ntBASIC26.29■■□□□ 1.8
Trav5-4A0A075B652 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trav5-4A0A075B652 Gm15045-201ENSMUST00000117359 883 ntBASIC25.9■■□□□ 1.74
Trav5-4A0A075B652 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
Trav5-4A0A075B652 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Trav5-4A0A075B652 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25.63■■□□□ 1.69
Trav5-4A0A075B652 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Trav5-4A0A075B652 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Trav5-4A0A075B652 Gm24109-201ENSMUST00000175489 103 ntBASIC25.43■■□□□ 1.66
Trav5-4A0A075B652 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trav5-4A0A075B652 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Trav5-4A0A075B652 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Trav5-4A0A075B652 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Trav5-4A0A075B652 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Trav5-4A0A075B652 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Trav5-4A0A075B652 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Trav5-4A0A075B652 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trav5-4A0A075B652 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
Trav5-4A0A075B652 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
Trav5-4A0A075B652 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.89■■□□□ 1.58
Trav5-4A0A075B652 Gm23366-201ENSMUST00000175022 89 ntBASIC24.84■■□□□ 1.57
Trav5-4A0A075B652 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Trav5-4A0A075B652 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
Trav5-4A0A075B652 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Trav5-4A0A075B652 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Trav5-4A0A075B652 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.68■■□□□ 1.54
Trav5-4A0A075B652 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trav5-4A0A075B652 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Trav5-4A0A075B652 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Trav5-4A0A075B652 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trav5-4A0A075B652 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trav5-4A0A075B652 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Trav5-4A0A075B652 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Trav5-4A0A075B652 AC153911.1-202ENSMUST00000218534 1034 ntBASIC24.29■■□□□ 1.48
Trav5-4A0A075B652 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Trav5-4A0A075B652 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.25■■□□□ 1.47
Trav5-4A0A075B652 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.17■■□□□ 1.46
Trav5-4A0A075B652 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.11■■□□□ 1.45
Trav5-4A0A075B652 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Trav5-4A0A075B652 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
Trav5-4A0A075B652 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trav5-4A0A075B652 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trav5-4A0A075B652 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trav5-4A0A075B652 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Trav5-4A0A075B652 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Trav5-4A0A075B652 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Trav5-4A0A075B652 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trav5-4A0A075B652 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.57■■□□□ 1.36
Trav5-4A0A075B652 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.54■■□□□ 1.36
Trav5-4A0A075B652 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Trav5-4A0A075B652 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav5-4A0A075B652 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC23.51■■□□□ 1.35
Trav5-4A0A075B652 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Trav5-4A0A075B652 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.44■■□□□ 1.34
Trav5-4A0A075B652 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav5-4A0A075B652 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
Trav5-4A0A075B652 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav5-4A0A075B652 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC23.4■■□□□ 1.34
Trav5-4A0A075B652 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trav5-4A0A075B652 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Trav5-4A0A075B652 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Trav5-4A0A075B652 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trav5-4A0A075B652 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC23.29■■□□□ 1.32
Trav5-4A0A075B652 Gm27325-201ENSMUST00000175467 74 ntBASIC23.24■■□□□ 1.31
Trav5-4A0A075B652 Gm25238-201ENSMUST00000174914 89 ntBASIC23.22■■□□□ 1.31
Trav5-4A0A075B652 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
Trav5-4A0A075B652 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Trav5-4A0A075B652 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Trav5-4A0A075B652 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Trav5-4A0A075B652 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC23.16■■□□□ 1.3
Trav5-4A0A075B652 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trav5-4A0A075B652 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trav5-4A0A075B652 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Trav5-4A0A075B652 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Trav5-4A0A075B652 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trav5-4A0A075B652 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav5-4A0A075B652 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav5-4A0A075B652 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC23.02■■□□□ 1.28
Trav5-4A0A075B652 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Trav5-4A0A075B652 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trav5-4A0A075B652 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trav5-4A0A075B652 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trav5-4A0A075B652 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav5-4A0A075B652 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Trav5-4A0A075B652 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Trav5-4A0A075B652 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22.89■■□□□ 1.25
Trav5-4A0A075B652 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trav5-4A0A075B652 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Trav5-4A0A075B652 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trav5-4A0A075B652 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trav5-4A0A075B652 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
Trav5-4A0A075B652 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
Trav5-4A0A075B652 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC22.79■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms