Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Gm25239-201ENSMUST00000174915 86 ntBASIC50.25■■■■■ 5.63
Ubr3Q5U430 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC46.85■■■■■ 5.09
Ubr3Q5U430 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC45.76■■■■■ 4.92
Ubr3Q5U430 Gm24109-201ENSMUST00000175489 103 ntBASIC43.96■■■■■ 4.63
Ubr3Q5U430 Gm15042-201ENSMUST00000120212 883 ntBASIC43.43■■■■■ 4.54
Ubr3Q5U430 Gm15045-201ENSMUST00000117359 883 ntBASIC42.64■■■■■ 4.42
Ubr3Q5U430 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC42.51■■■■■ 4.4
Ubr3Q5U430 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC42.24■■■■■ 4.35
Ubr3Q5U430 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC42.19■■■■■ 4.34
Ubr3Q5U430 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC42.16■■■■■ 4.34
Ubr3Q5U430 Gm23366-201ENSMUST00000175022 89 ntBASIC41.79■■■■■ 4.28
Ubr3Q5U430 AC153911.1-202ENSMUST00000218534 1034 ntBASIC41.06■■■■■ 4.16
Ubr3Q5U430 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC40.64■■■■■ 4.1
Ubr3Q5U430 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC40.54■■■■■ 4.08
Ubr3Q5U430 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC40.51■■■■■ 4.08
Ubr3Q5U430 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC40.41■■■■■ 4.06
Ubr3Q5U430 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.3■■■■■ 4.04
Ubr3Q5U430 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC40.23■■■■■ 4.03
Ubr3Q5U430 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC40.07■■■■■ 4
Ubr3Q5U430 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC39.95■■■■□ 3.99
Ubr3Q5U430 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC39.87■■■■□ 3.97
Ubr3Q5U430 Gm25238-201ENSMUST00000174914 89 ntBASIC39.82■■■■□ 3.97
Ubr3Q5U430 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.8■■■■□ 3.96
Ubr3Q5U430 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC39.78■■■■□ 3.96
Ubr3Q5U430 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC39.34■■■■□ 3.89
Ubr3Q5U430 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC39.06■■■■□ 3.84
Ubr3Q5U430 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC39.05■■■■□ 3.84
Ubr3Q5U430 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC38.99■■■■□ 3.83
Ubr3Q5U430 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38.97■■■■□ 3.83
Ubr3Q5U430 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC38.92■■■■□ 3.82
Ubr3Q5U430 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
Ubr3Q5U430 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC38.73■■■■□ 3.79
Ubr3Q5U430 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC38.71■■■■□ 3.79
Ubr3Q5U430 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC38.62■■■■□ 3.77
Ubr3Q5U430 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC38.61■■■■□ 3.77
Ubr3Q5U430 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC38.48■■■■□ 3.75
Ubr3Q5U430 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC38.46■■■■□ 3.75
Ubr3Q5U430 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC38.43■■■■□ 3.74
Ubr3Q5U430 Gm25262-201ENSMUST00000174934 133 ntBASIC38.2■■■■□ 3.71
Ubr3Q5U430 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC38.08■■■■□ 3.69
Ubr3Q5U430 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC37.98■■■■□ 3.67
Ubr3Q5U430 Gm27325-201ENSMUST00000175467 74 ntBASIC37.96■■■■□ 3.67
Ubr3Q5U430 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
Ubr3Q5U430 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.83■■■■□ 3.65
Ubr3Q5U430 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC37.8■■■■□ 3.64
Ubr3Q5U430 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC37.73■■■■□ 3.63
Ubr3Q5U430 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC37.66■■■■□ 3.62
Ubr3Q5U430 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC37.64■■■■□ 3.62
Ubr3Q5U430 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
Ubr3Q5U430 Rab21-202ENSMUST00000218831 843 ntBASIC37.54■■■■□ 3.6
Ubr3Q5U430 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC37.54■■■■□ 3.6
Ubr3Q5U430 Gm26115-201ENSMUST00000175605 87 ntBASIC37.52■■■■□ 3.6
Ubr3Q5U430 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC37.44■■■■□ 3.58
Ubr3Q5U430 Gm8109-201ENSMUST00000194076 746 ntBASIC37.43■■■■□ 3.58
Ubr3Q5U430 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC37.42■■■■□ 3.58
Ubr3Q5U430 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC37.42■■■■□ 3.58
Ubr3Q5U430 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC37.39■■■■□ 3.58
Ubr3Q5U430 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC37.25■■■■□ 3.55
Ubr3Q5U430 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC37.25■■■■□ 3.55
Ubr3Q5U430 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
Ubr3Q5U430 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC37.16■■■■□ 3.54
Ubr3Q5U430 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC37.15■■■■□ 3.54
Ubr3Q5U430 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC37.04■■■■□ 3.52
Ubr3Q5U430 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC36.94■■■■□ 3.5
Ubr3Q5U430 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
Ubr3Q5U430 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC36.88■■■■□ 3.49
Ubr3Q5U430 Psd-208ENSMUST00000224556 2034 ntBASIC36.83■■■■□ 3.49
Ubr3Q5U430 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC36.79■■■■□ 3.48
Ubr3Q5U430 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC36.74■■■■□ 3.47
Ubr3Q5U430 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC36.72■■■■□ 3.47
Ubr3Q5U430 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC36.65■■■■□ 3.46
Ubr3Q5U430 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC36.63■■■■□ 3.45
Ubr3Q5U430 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC36.55■■■■□ 3.44
Ubr3Q5U430 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC36.52■■■■□ 3.44
Ubr3Q5U430 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC36.5■■■■□ 3.43
Ubr3Q5U430 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC36.48■■■■□ 3.43
Ubr3Q5U430 Gm17082-201ENSMUST00000166043 1091 ntBASIC36.47■■■■□ 3.43
Ubr3Q5U430 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
Ubr3Q5U430 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC36.4■■■■□ 3.42
Ubr3Q5U430 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
Ubr3Q5U430 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC36.36■■■■□ 3.41
Ubr3Q5U430 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC36.33■■■■□ 3.41
Ubr3Q5U430 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC36.16■■■■□ 3.38
Ubr3Q5U430 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC36.14■■■■□ 3.38
Ubr3Q5U430 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC36.12■■■■□ 3.37
Ubr3Q5U430 Gm24804-201ENSMUST00000174982 85 ntBASIC36.07■■■■□ 3.37
Ubr3Q5U430 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC36.05■■■■□ 3.36
Ubr3Q5U430 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
Ubr3Q5U430 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC35.98■■■■□ 3.35
Ubr3Q5U430 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC35.97■■■■□ 3.35
Ubr3Q5U430 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC35.96■■■■□ 3.35
Ubr3Q5U430 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC35.94■■■■□ 3.34
Ubr3Q5U430 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC35.92■■■■□ 3.34
Ubr3Q5U430 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC35.9■■■■□ 3.34
Ubr3Q5U430 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC35.9■■■■□ 3.34
Ubr3Q5U430 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
Ubr3Q5U430 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
Ubr3Q5U430 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC35.81■■■■□ 3.32
Ubr3Q5U430 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC35.77■■■■□ 3.32
Ubr3Q5U430 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms