Protein–RNA interactions for Protein: A0A0A6YXN5

Ighv1-43, Immunoglobulin heavy variable V1-43 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ighv1-43A0A0A6YXN5 Gm25239-201ENSMUST00000174915 86 ntBASIC35.73■■■■□ 3.31
Ighv1-43A0A0A6YXN5 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
Ighv1-43A0A0A6YXN5 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Ighv1-43A0A0A6YXN5 Gm15042-201ENSMUST00000120212 883 ntBASIC31.33■■■□□ 2.61
Ighv1-43A0A0A6YXN5 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
Ighv1-43A0A0A6YXN5 Gm24109-201ENSMUST00000175489 103 ntBASIC30.9■■■□□ 2.54
Ighv1-43A0A0A6YXN5 Gm15045-201ENSMUST00000117359 883 ntBASIC30.64■■■□□ 2.5
Ighv1-43A0A0A6YXN5 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Ighv1-43A0A0A6YXN5 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ighv1-43A0A0A6YXN5 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
Ighv1-43A0A0A6YXN5 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
Ighv1-43A0A0A6YXN5 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Ighv1-43A0A0A6YXN5 Gm23366-201ENSMUST00000175022 89 ntBASIC29.89■■■□□ 2.38
Ighv1-43A0A0A6YXN5 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Ighv1-43A0A0A6YXN5 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Ighv1-43A0A0A6YXN5 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Ighv1-43A0A0A6YXN5 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.13■■■□□ 2.25
Ighv1-43A0A0A6YXN5 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
Ighv1-43A0A0A6YXN5 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
Ighv1-43A0A0A6YXN5 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Ighv1-43A0A0A6YXN5 AC153911.1-202ENSMUST00000218534 1034 ntBASIC28.77■■■□□ 2.2
Ighv1-43A0A0A6YXN5 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Ighv1-43A0A0A6YXN5 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ighv1-43A0A0A6YXN5 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
Ighv1-43A0A0A6YXN5 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.17
Ighv1-43A0A0A6YXN5 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
Ighv1-43A0A0A6YXN5 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC28.6■■■□□ 2.17
Ighv1-43A0A0A6YXN5 Psd-208ENSMUST00000224556 2034 ntBASIC28.55■■■□□ 2.16
Ighv1-43A0A0A6YXN5 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.53■■■□□ 2.16
Ighv1-43A0A0A6YXN5 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC28.47■■■□□ 2.15
Ighv1-43A0A0A6YXN5 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ighv1-43A0A0A6YXN5 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ighv1-43A0A0A6YXN5 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ighv1-43A0A0A6YXN5 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ighv1-43A0A0A6YXN5 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.19■■■□□ 2.1
Ighv1-43A0A0A6YXN5 Gm25238-201ENSMUST00000174914 89 ntBASIC28.16■■■□□ 2.1
Ighv1-43A0A0A6YXN5 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC28.04■■■□□ 2.08
Ighv1-43A0A0A6YXN5 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Ighv1-43A0A0A6YXN5 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
Ighv1-43A0A0A6YXN5 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Ighv1-43A0A0A6YXN5 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
Ighv1-43A0A0A6YXN5 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Ighv1-43A0A0A6YXN5 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC27.68■■■□□ 2.02
Ighv1-43A0A0A6YXN5 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC27.57■■■□□ 2
Ighv1-43A0A0A6YXN5 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.56■■■□□ 2
Ighv1-43A0A0A6YXN5 Gm27325-201ENSMUST00000175467 74 ntBASIC27.49■■□□□ 1.99
Ighv1-43A0A0A6YXN5 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Ighv1-43A0A0A6YXN5 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Ighv1-43A0A0A6YXN5 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
Ighv1-43A0A0A6YXN5 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.38■■□□□ 1.97
Ighv1-43A0A0A6YXN5 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Ighv1-43A0A0A6YXN5 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
Ighv1-43A0A0A6YXN5 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Ighv1-43A0A0A6YXN5 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.24■■□□□ 1.95
Ighv1-43A0A0A6YXN5 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC27.24■■□□□ 1.95
Ighv1-43A0A0A6YXN5 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC27.15■■□□□ 1.94
Ighv1-43A0A0A6YXN5 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Ighv1-43A0A0A6YXN5 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Ighv1-43A0A0A6YXN5 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Ighv1-43A0A0A6YXN5 Gm25262-201ENSMUST00000174934 133 ntBASIC26.96■■□□□ 1.91
Ighv1-43A0A0A6YXN5 Rab21-202ENSMUST00000218831 843 ntBASIC26.94■■□□□ 1.9
Ighv1-43A0A0A6YXN5 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ighv1-43A0A0A6YXN5 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.93■■□□□ 1.9
Ighv1-43A0A0A6YXN5 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Ighv1-43A0A0A6YXN5 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Ighv1-43A0A0A6YXN5 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ighv1-43A0A0A6YXN5 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC26.84■■□□□ 1.89
Ighv1-43A0A0A6YXN5 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
Ighv1-43A0A0A6YXN5 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Ighv1-43A0A0A6YXN5 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
Ighv1-43A0A0A6YXN5 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.8■■□□□ 1.88
Ighv1-43A0A0A6YXN5 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26.73■■□□□ 1.87
Ighv1-43A0A0A6YXN5 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Ighv1-43A0A0A6YXN5 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Ighv1-43A0A0A6YXN5 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Ighv1-43A0A0A6YXN5 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ighv1-43A0A0A6YXN5 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ighv1-43A0A0A6YXN5 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ighv1-43A0A0A6YXN5 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ighv1-43A0A0A6YXN5 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Ighv1-43A0A0A6YXN5 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC26.56■■□□□ 1.84
Ighv1-43A0A0A6YXN5 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Ighv1-43A0A0A6YXN5 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Ighv1-43A0A0A6YXN5 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.5■■□□□ 1.83
Ighv1-43A0A0A6YXN5 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC26.49■■□□□ 1.83
Ighv1-43A0A0A6YXN5 Gm42596-201ENSMUST00000196305 1958 ntBASIC26.42■■□□□ 1.82
Ighv1-43A0A0A6YXN5 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC26.41■■□□□ 1.82
Ighv1-43A0A0A6YXN5 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ighv1-43A0A0A6YXN5 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC26.38■■□□□ 1.81
Ighv1-43A0A0A6YXN5 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Ighv1-43A0A0A6YXN5 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ighv1-43A0A0A6YXN5 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ighv1-43A0A0A6YXN5 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ighv1-43A0A0A6YXN5 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ighv1-43A0A0A6YXN5 Gm26115-201ENSMUST00000175605 87 ntBASIC26.26■■□□□ 1.79
Ighv1-43A0A0A6YXN5 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ighv1-43A0A0A6YXN5 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ighv1-43A0A0A6YXN5 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC26.22■■□□□ 1.79
Ighv1-43A0A0A6YXN5 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ighv1-43A0A0A6YXN5 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC26.19■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms