RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 HRASLSQ9HDD0 168 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 CLEC2DQ9UHP7 191 aa12.73□□□□□ -0.37
CLK3-227ENST00000570296 PNMA8CA0A1B0GUJ8 204 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 SMIM9A6NGZ8 99 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 K7EIM0 57 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 FGF2P09038 288 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 OR13C7P0DN81 318 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 CD37P11049 281 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 GNB3P16520 340 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 ZNF773Q6PK81 442 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 LILRB2Q8N423 598 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 MFSD4AQ8N468 514 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 OR10W1Q8NGF6 305 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 OR56B1Q8NGI3 324 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 APH1BQ8WW43 257 aa12.72□□□□□ -0.37
CLK3-227ENST00000570296 DIMT1Q9UNQ2 313 aaKnown RBP12.72□□□□□ -0.37
CLK3-227ENST00000570296 F11RQ9Y624 299 aaKnown RBP12.72□□□□□ -0.37
CLK3-227ENST00000570296 IRGMA1A4Y4 181 aa12.71□□□□□ -0.37
CLK3-227ENST00000570296 K7EQG2 157 aa12.71□□□□□ -0.37
CLK3-227ENST00000570296 IGLV2-14P01704 120 aa12.71□□□□□ -0.37
CLK3-227ENST00000570296 FGF9P31371 208 aaPredicted RBP12.71□□□□□ -0.37
CLK3-227ENST00000570296 NUTF2P61970 127 aaKnown RBP12.71□□□□□ -0.37
CLK3-227ENST00000570296 WT1-ASQ06250 92 aa12.71□□□□□ -0.37
CLK3-227ENST00000570296 EIF4EBP1Q13541 118 aaPredicted RBP12.71□□□□□ -0.37
CLK3-227ENST00000570296 FAM222AQ5U5X8 452 aa12.71□□□□□ -0.37
CLK3-227ENST00000570296 ZNF705AQ6ZN79 300 aaPredicted RBP12.71□□□□□ -0.37
CLK3-227ENST00000570296 ZNF503Q96F45 646 aa12.71□□□□□ -0.37
CLK3-227ENST00000570296 MDFICQ9P1T7 246 aa12.71□□□□□ -0.37
CLK3-227ENST00000570296 HLA-DQB1P01920 261 aa12.7□□□□□ -0.38
CLK3-227ENST00000570296 P2RY14Q15391 338 aa12.7□□□□□ -0.38
CLK3-227ENST00000570296 RBM48Q5RL73 367 aaKnown RBP12.7□□□□□ -0.38
CLK3-227ENST00000570296 MAFIPQ8WZ33 124 aa12.7□□□□□ -0.38
CLK3-227ENST00000570296 NXF2Q9GZY0 626 aaKnown RBP12.7□□□□□ -0.38
CLK3-227ENST00000570296 Q9H521 79 aa12.7□□□□□ -0.38
CLK3-227ENST00000570296 XCL2Q9UBD3 114 aa12.7□□□□□ -0.38
CLK3-227ENST00000570296 KCNK7Q9Y2U2 307 aa12.7□□□□□ -0.38
CLK3-227ENST00000570296 OR2W1Q9Y3N9 320 aa12.7□□□□□ -0.38
CLK3-227ENST00000570296 ZNF705FA8MVS1 300 aaPredicted RBP12.69□□□□□ -0.38
CLK3-227ENST00000570296 J3QRK9 145 aa12.69□□□□□ -0.38
CLK3-227ENST00000570296 APOHP02749 345 aaPredicted RBP12.69□□□□□ -0.38
CLK3-227ENST00000570296 ZNF688P0C7X2 276 aa12.69□□□□□ -0.38
CLK3-227ENST00000570296 ZNF705DP0CH99 300 aaPredicted RBP12.69□□□□□ -0.38
CLK3-227ENST00000570296 ZNF705BP0CI00 300 aaPredicted RBP12.69□□□□□ -0.38
CLK3-227ENST00000570296 SMN1Q16637 294 aaKnown RBP12.69□□□□□ -0.38
CLK3-227ENST00000570296 Q6ZS49 121 aa12.69□□□□□ -0.38
CLK3-227ENST00000570296 C17orf77Q96MU5 243 aa12.69□□□□□ -0.38
CLK3-227ENST00000570296 TMEM231Q9H6L2 316 aa12.69□□□□□ -0.38
CLK3-227ENST00000570296 PGPEP1Q9NXJ5 209 aa12.69□□□□□ -0.38
CLK3-227ENST00000570296 SPATA2Q9UM82 520 aa12.69□□□□□ -0.38
CLK3-227ENST00000570296 RFNGQ9Y644 331 aa12.69□□□□□ -0.38
CLK3-227ENST00000570296 FAM229AH3BQW9 127 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 UPK2O00526 184 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 TRAPPC2P0DI81 140 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 TRAPPC2BP0DI82 140 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 TTC32Q5I0X7 151 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 Q6ZSN1 163 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 STXBP6Q8NFX7 210 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 TXN2Q99757 166 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 RAB26Q9ULW5 256 aa12.68□□□□□ -0.38
CLK3-227ENST00000570296 PUS1Q9Y606 427 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLK3-227ENST00000570296 TRAV3A0A0B4J244 114 aa12.67□□□□□ -0.38
CLK3-227ENST00000570296 GNAO1P09471 354 aa12.67□□□□□ -0.38
CLK3-227ENST00000570296 CCL18P55774 89 aa12.67□□□□□ -0.38
CLK3-227ENST00000570296 IGHV3-66A0A0C4DH42 116 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 KRTAP29-1A8MX34 341 aaPredicted RBP12.66□□□□□ -0.38
CLK3-227ENST00000570296 WBP4O75554 376 aaKnown RBP12.66□□□□□ -0.38
CLK3-227ENST00000570296 GNRHRP30968 328 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 MFAP4P55083 255 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 TAS2R31P59538 309 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 POU2AF1Q16633 256 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 ACSM3Q53FZ2 586 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 CDPF1Q6NVV7 123 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 TOMM20LQ6UXN7 152 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 RAB3CQ96E17 227 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 RAB40CQ96S21 281 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 TAS2R8Q9NYW2 309 aa12.66□□□□□ -0.38
CLK3-227ENST00000570296 IGKV1D-13A0A0B4J2D9 117 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 SLC17A2O00624 439 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 RBFOX2O43251 390 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLK3-227ENST00000570296 IGKV1-13P0DP09 117 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 INSL4Q14641 139 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 GSG1LQ6UXU4 331 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 DCANP1Q8TF63 244 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 LSM10Q969L4 123 aaKnown RBP12.65□□□□□ -0.38
CLK3-227ENST00000570296 TMEM80Q96HE8 168 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 PLGRKTQ9HBL7 147 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 LINC00588Q9Y4M8 146 aa12.65□□□□□ -0.38
CLK3-227ENST00000570296 SMR3BP02814 79 aaPredicted RBP12.64□□□□□ -0.39
CLK3-227ENST00000570296 NQO2P16083 231 aa12.64□□□□□ -0.39
CLK3-227ENST00000570296 OR1L8Q8NGR8 309 aa12.64□□□□□ -0.39
CLK3-227ENST00000570296 CNBD2Q96M20 576 aa12.64□□□□□ -0.39
CLK3-227ENST00000570296 KRTAP1-5Q9BYS1 174 aa12.64□□□□□ -0.39
CLK3-227ENST00000570296 DCSTAMPQ9H295 470 aa12.64□□□□□ -0.39
CLK3-227ENST00000570296 SCN3BQ9NY72 215 aa12.64□□□□□ -0.39
CLK3-227ENST00000570296 IGKV1D-8A0A087WSZ0 117 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 TEX50A0A1B0GTY4 177 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 A0A1W2PS18 150 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 EFCAB10A6NFE3 127 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 CTXN2P0C2S0 81 aa12.63□□□□□ -0.39
CLK3-227ENST00000570296 NFYAP23511 347 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms