RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 IL3RAP26951 378 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 KRTAP10-9P60411 292 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 RPL15P61313 204 aaKnown RBP6.79□□□□□ -1.32
VPS29-203ENST00000546588 PAX8Q06710 450 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 LOXL1Q08397 574 aaPredicted RBP6.79□□□□□ -1.32
VPS29-203ENST00000546588 IAH1Q2TAA2 248 aaPredicted RBP6.79□□□□□ -1.32
VPS29-203ENST00000546588 C5orf47Q569G3 176 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 RPL39P5Q59GN2 51 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 MINOS1Q5TGZ0 78 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 FAM90A2PQ658T7 463 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 PRSS54Q6PEW0 395 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 BTNL3Q6UXE8 466 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 ZNF429Q86V71 674 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 PDPNQ86YL7 162 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 ZNF695Q8IW36 515 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 LYG1Q8N1E2 194 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 ABHD12Q8N2K0 398 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 ZNF383Q8NA42 475 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 OR13D1Q8NGV5 346 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 OR4S2Q8NH73 311 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 OSR1Q8TAX0 266 aaPredicted RBP6.79□□□□□ -1.32
VPS29-203ENST00000546588 SFT2D1Q8WV19 159 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 NPIPB3Q92617 1050 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 RNF2Q99496 336 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 NABP2Q9BQ15 211 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 GGACTQ9BVM4 153 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 GSKIPQ9P0R6 139 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 AMMECR1Q9Y4X0 333 aaPredicted RBP6.79□□□□□ -1.32
VPS29-203ENST00000546588 INSIG2Q9Y5U4 225 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 MINOS1-NBL1R4GNA1 71 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 URGCP-MRPS24S4R325 110 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.79□□□□□ -1.322e-11■■■■■ 31.7
VPS29-203ENST00000546588 ASH1LQ9NR48 2969 aaKnown RBP6.79□□□□□ -1.32
VPS29-203ENST00000546588 DOPEY2Q9Y3R5 2298 aa6.79□□□□□ -1.32
VPS29-203ENST00000546588 APCP25054 2843 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 ANKRD17O75179 2603 aaKnown RBP6.78□□□□□ -1.32
VPS29-203ENST00000546588 A0A0G2JRQ6 117 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 A0A1W2PPI3 338 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 RNF222A6NCQ9 220 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 FAM157AC9JC47 383 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 H0YIZ8 118 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 H0YJW9 148 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 M0R1X1 148 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 DEDDO75618 318 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 HOXB5P09067 269 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 SCGB1A1P11684 91 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 ZP3P21754 424 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 NFYBP25208 207 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 FGF8P55075 233 aaPredicted RBP6.78□□□□□ -1.32
VPS29-203ENST00000546588 PSG3Q16557 428 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 CLEC12BQ2HXU8 276 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 TMEM41BQ5BJD5 291 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 RBPMS2Q6ZRY4 209 aaKnown RBP6.78□□□□□ -1.32
VPS29-203ENST00000546588 Q6ZSN1 163 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 MTURNQ8N3F0 131 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 NECAP1Q8NC96 275 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 OR52E5Q8NH55 327 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 SCARB1Q8WTV0 552 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 TCTEX1D2Q8WW35 142 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 LEAP2Q969E1 77 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 NARS2Q96I59 477 aaKnown RBP6.78□□□□□ -1.32
VPS29-203ENST00000546588 AQP10Q96PS8 301 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 RNF5Q99942 180 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 RNF126Q9BV68 326 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 HSPB7Q9UBY9 170 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 RCL1Q9Y2P8 373 aaKnown RBP6.78□□□□□ -1.32
VPS29-203ENST00000546588 ARID1AO14497 2285 aa6.78□□□□□ -1.32
VPS29-203ENST00000546588 PDZD2O15018 2839 aa6.77□□□□□ -1.32
VPS29-203ENST00000546588 TACC2O95359 2948 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 INS-IGF2F8WCM5 200 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 K7EPK0 472 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 AP4M1O00189 453 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 SCO1O75880 301 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 OR2F2O95006 317 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 S1PR2O95136 353 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 MBPP02686 304 aaPredicted RBP6.77□□□□□ -1.33
VPS29-203ENST00000546588 RD3LP0DJH9 198 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 LPAR6P43657 344 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 RAB9AP51151 201 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 UBE2E1P51965 193 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 DVL1P1P54792 670 aaPredicted RBP6.77□□□□□ -1.33
VPS29-203ENST00000546588 TAS2R30P59541 319 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 OR2F1Q13607 317 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 LTC4SQ16873 150 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 LGALSLQ3ZCW2 172 aaPredicted RBP6.77□□□□□ -1.33
VPS29-203ENST00000546588 LDLRAD2Q5SZI1 272 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 ZNF562Q6V9R5 426 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 VMO1Q7Z5L0 202 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 PUSL1Q8N0Z8 303 aaKnown RBP6.77□□□□□ -1.33
VPS29-203ENST00000546588 FAM71E2Q8N5Q1 922 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 DMBX1Q8NFW5 382 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 OR4C13Q8NGP0 309 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 NRGNQ92686 78 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 GPR146Q96CH1 333 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 PERPQ96FX8 193 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 TBX15Q96SF7 602 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 HEXA-AS1Q9H8Q6 139 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 BET1LQ9NYM9 111 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 SMPXQ9UHP9 88 aa6.77□□□□□ -1.33
VPS29-203ENST00000546588 RNF150Q9ULK6 438 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms